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Related papers: DIRI: Adversarial Patient Reidentification with La…

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De-identification of electronic health records (EHR) is a vital step towards advancing health informatics research and maximising the use of available data. It is a two-step process where step one is the identification of protected health…

Computers and Society · Computer Science 2020-02-18 Vithya Yogarajan , Bernhard Pfahringer , Michael Mayo

Automated deidentification of clinical text data is crucial due to the high cost of manual deidentification, which has been a barrier to sharing clinical text and the advancement of clinical natural language processing. However, creating…

Computation and Language · Computer Science 2023-11-07 Callandra Moore , Jonathan Ranisau , Walter Nelson , Jeremy Petch , Alistair Johnson

The detection of Protected Health Information (PHI) in medical imaging is critical for safeguarding patient privacy and ensuring compliance with regulatory frameworks. Traditional detection methodologies predominantly utilize Optical…

Computer Vision and Pattern Recognition · Computer Science 2026-05-22 Tuan Truong , Guillermo Jimenez Perez , Pedro Osorio , Matthias Lenga

The unstructured nature of clinical notes within electronic health records often conceals vital patient-related information, making it challenging to access or interpret. To uncover this hidden information, specialized Natural Language…

Anonymizing text that contains sensitive information is crucial for a wide range of applications. Existing techniques face the emerging challenges of the re-identification ability of large language models (LLMs), which have shown advanced…

Computation and Language · Computer Science 2025-06-19 Tianyu Yang , Xiaodan Zhu , Iryna Gurevych

Objective: The use of routinely-acquired medical data for research purposes requires the protection of patient confidentiality via data anonymisation. The objective of this work is to calculate the risk of re-identification arising from a…

Machine Learning · Computer Science 2022-04-01 Anna Antoniou , Giacomo Dossena , Julia MacMillan , Steven Hamblin , David Clifton , Paula Petrone

In the field of machine learning, domain-specific annotated data is an invaluable resource for training effective models. However, in the medical domain, this data often includes Personal Health Information (PHI), raising significant…

Computation and Language · Computer Science 2024-09-13 Tal Baumel , Andre Manoel , Daniel Jones , Shize Su , Huseyin Inan , Aaron , Bornstein , Robert Sim

This paper takes on the problem of automatically identifying clinically-relevant patterns in medical datasets without compromising patient privacy. To achieve this goal, we treat datasets as a black box for both internal and external users…

Software Engineering · Computer Science 2015-01-26 Nafees Qamar , Yilong Yang , Andras Nadas , Zhiming Liu , Janos Sztipanovits

Deidentification seeks to anonymize textual data prior to distribution. Automatic deidentification primarily uses supervised named entity recognition from human-labeled data points. We propose an unsupervised deidentification method that…

Computation and Language · Computer Science 2022-10-24 John X. Morris , Justin T. Chiu , Ramin Zabih , Alexander M. Rush

Prompt serves as a crucial link in interacting with large language models (LLMs), widely impacting the accuracy and interpretability of model outputs. However, acquiring accurate and high-quality responses necessitates precise prompts,…

Cryptography and Security · Computer Science 2024-08-20 Xiongtao Sun , Gan Liu , Zhipeng He , Hui Li , Xiaoguang Li

Medical imaging has significantly advanced computer-aided diagnosis, yet its re-identification (ReID) risks raise critical privacy concerns, calling for de-identification (DeID) techniques. Unfortunately, existing DeID methods neither…

Computer Vision and Pattern Recognition · Computer Science 2025-07-30 Yuan Tian , Shuo Wang , Rongzhao Zhang , Zijian Chen , Yankai Jiang , Chunyi Li , Xiangyang Zhu , Fang Yan , Qiang Hu , XiaoSong Wang , Guangtao Zhai

Physician burnout in the United States has reached critical levels, driven in part by the administrative burden of Electronic Health Record (EHR) documentation and complex diagnostic codes. To relieve this strain and maintain strict patient…

Information Retrieval · Computer Science 2026-03-25 Peter Hartnett , Chung-Chi Huang , Sarah Hartnett , David Hartnett

A common practice in the medical industry is the use of clinical notes, which consist of detailed patient observations. However, electronic health record systems frequently do not contain these observations in a structured format, rendering…

Computation and Language · Computer Science 2023-10-09 Neil Daniel

Named entity recognition (NER) stands as a fundamental and pivotal task within the realm of Natural Language Processing. Particularly within the domain of Biomedical Method NER, this task presents notable challenges, stemming from the…

Computation and Language · Computer Science 2024-07-01 Chen Tang , Bohao Yang , Kun Zhao , Bo Lv , Chenghao Xiao , Frank Guerin , Chenghua Lin

Medical systems in general, and patient treatment decisions and outcomes in particular, are affected by bias based on gender and other demographic elements. As language models are increasingly applied to medicine, there is a growing…

Computation and Language · Computer Science 2021-03-11 Joshua R. Minot , Nicholas Cheney , Marc Maier , Danne C. Elbers , Christopher M. Danforth , Peter Sheridan Dodds

Clinical notes, which can be embedded into electronic medical records, document patient care delivery and summarize interactions between healthcare providers and patients. These clinical notes directly inform patient care and can also…

Computation and Language · Computer Science 2022-03-25 Suzanna Schmeelk , Martins Samuel Dogo , Yifan Peng , Braja Gopal Patra

Sanitizing sensitive text data typically involves removing personally identifiable information (PII) or generating synthetic data under the assumption that these methods adequately protect privacy; however, their effectiveness is often only…

Cryptography and Security · Computer Science 2026-03-17 Rui Xin , Niloofar Mireshghallah , Shuyue Stella Li , Michael Duan , Hyunwoo Kim , Yejin Choi , Yulia Tsvetkov , Sewoong Oh , Pang Wei Koh

Clinical patient notes are critical for documenting patient interactions, diagnoses, and treatment plans in medical practice. Ensuring accurate evaluation of these notes is essential for medical education and certification. However, manual…

Computation and Language · Computer Science 2024-01-25 Jingyu Xu , Yifeng Jiang , Bin Yuan , Shulin Li , Tianbo Song

Digital health interventions (DHIs) and remote patient monitoring (RPM) have shown great potential in improving chronic disease management through personalized care. However, barriers like limited efficacy and workload concerns hinder…

Machine Learning · Computer Science 2025-12-23 Johannes O. Ferstad , Emily B. Fox , David Scheinker , Ramesh Johari

Large Language Models (LLMs) demonstrate remarkable versatility in various NLP tasks but encounter distinct challenges in biomedical due to the complexities of language and data scarcity. This paper investigates LLMs application in the…

Computation and Language · Computer Science 2024-07-12 Masoud Monajatipoor , Jiaxin Yang , Joel Stremmel , Melika Emami , Fazlolah Mohaghegh , Mozhdeh Rouhsedaghat , Kai-Wei Chang