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The robust development of Electronic Health Records (EHRs) causes a significant growth in sharing EHRs for clinical research. However, such a sharing makes it difficult to protect patient's privacy. A number of automated de-identification…

Cryptography and Security · Computer Science 2012-11-19 Jie Qian , Nafees Qamar

Data sharing is crucial for open science and reproducible research, but the legal sharing of clinical data requires the removal of protected health information from electronic health records. This process, known as de-identification, is…

Machine Learning · Computer Science 2024-01-04 Yuxin Xiao , Shulammite Lim , Tom Joseph Pollard , Marzyeh Ghassemi

Patient face images provide a convenient mean for evaluating eye diseases, while also raising privacy concerns. Here, we introduce ROFI, a deep learning-based privacy protection framework for ophthalmology. Using weakly supervised learning…

Objective: To enhance automated de-identification of radiology reports by scaling transformer-based models through extensive training datasets and benchmarking performance against commercial cloud vendor systems for protected health…

Computation and Language · Computer Science 2025-11-24 Eva Prakash , Maayane Attias , Pierre Chambon , Justin Xu , Steven Truong , Jean-Benoit Delbrouck , Tessa Cook , Curtis Langlotz

Medical imaging research increasingly depends on large-scale data sharing to promote reproducibility and train Artificial Intelligence (AI) models. Ensuring patient privacy remains a significant challenge for open-access data sharing.…

Text de-identification techniques are often used to mask personally identifiable information (PII) from documents. Their ability to conceal the identity of the individuals mentioned in a text is, however, hard to measure. Recent work has…

Computation and Language · Computer Science 2025-10-13 Lucas Georges Gabriel Charpentier , Pierre Lison

Large-scale clinical data is invaluable to driving many computational scientific advances today. However, understandable concerns regarding patient privacy hinder the open dissemination of such data and give rise to suboptimal siloed…

Computation and Language · Computer Science 2019-05-23 Oren Melamud , Chaitanya Shivade

Despite the advances in digital healthcare systems offering curated structured knowledge, much of the critical information still lies in large volumes of unlabeled and unstructured clinical texts. These texts, which often contain protected…

Ensuring the de-identification of medical imaging data is a critical step in enabling safe data sharing. This paper presents a hybrid de-identification framework designed to process Digital Imaging and Communications in Medicine (DICOM)…

Cryptography and Security · Computer Science 2025-09-03 Hamideh Haghiri , Rajesh Baidya , Stefan Dvoretskii , Klaus H. Maier-Hein , Marco Nolden

In this paper, we address the challenge of patient-note identification, which involves accurately matching an anonymized clinical note to its corresponding patient, represented by a set of related notes. This task has broad applications,…

Computation and Language · Computer Science 2025-04-01 Safa Alsaidi , Marc Vincent , Olivia Boyer , Nicolas Garcelon , Miguel Couceiro , Adrien Coulet

The de-identification (deID) of protected health information (PHI) and personally identifiable information (PII) is a fundamental requirement for sharing medical images, particularly through public repositories, to ensure compliance with…

For sharing privacy-sensitive data, de-identification is commonly regarded as adequate for safeguarding privacy. Synthetic data is also being considered as a privacy-preserving alternative. Recent successes with numerical and tabular data…

Computation and Language · Computer Science 2025-03-05 Atiquer Rahman Sarkar , Yao-Shun Chuang , Noman Mohammed , Xiaoqian Jiang

Documents revealing sensitive information about individuals must typically be de-identified. This de-identification is often done by masking all mentions of personally identifiable information (PII), thereby making it more difficult to…

Computation and Language · Computer Science 2025-05-20 Lucas Georges Gabriel Charpentier , Pierre Lison

Sharing sensitive texts for scientific purposes requires appropriate techniques to protect the privacy of patients and healthcare personnel. Anonymizing textual data is particularly challenging due to the presence of diverse unstructured…

Computation and Language · Computer Science 2025-02-20 Ibrahim Baroud , Lisa Raithel , Sebastian Möller , Roland Roller

Objective: To enhance health literacy and accessibility of health information for a diverse patient population by developing a patient-centered artificial intelligence (AI) solution using large language models (LLMs) and Fast Healthcare…

Computers and Society · Computer Science 2024-02-06 Paul Schmiedmayer , Adrit Rao , Philipp Zagar , Vishnu Ravi , Aydin Zahedivash , Arash Fereydooni , Oliver Aalami

Acronym identification focuses on finding the acronyms and the phrases that have been abbreviated, which is crucial for scientific document understanding tasks. However, the limited size of manually annotated datasets hinders further…

Computation and Language · Computer Science 2021-01-13 Danqing Zhu , Wangli Lin , Yang Zhang , Qiwei Zhong , Guanxiong Zeng , Weilin Wu , Jiayu Tang

In many countries, personal information that can be published or shared between organizations is regulated and, therefore, documents must undergo a process of de-identification to eliminate or obfuscate confidential data. Our work focuses…

Computation and Language · Computer Science 2019-10-10 Diego Garat , Dina Wonsever

Recent privacy research on large language models (LLMs) has shown that they achieve near-human-level performance at inferring personal data from online texts. With ever-increasing model capabilities, existing text anonymization methods are…

Artificial Intelligence · Computer Science 2025-02-04 Robin Staab , Mark Vero , Mislav Balunović , Martin Vechev

The process of matching patients with suitable clinical trials is essential for advancing medical research and providing optimal care. However, current approaches face challenges such as data standardization, ethical considerations, and a…

Computation and Language · Computer Science 2023-08-08 Jiayi Yuan , Ruixiang Tang , Xiaoqian Jiang , Xia Hu

Medical health records and clinical summaries contain a vast amount of important information in textual form that can help advancing research on treatments, drugs and public health. However, the majority of these information is not shared…

Computation and Language · Computer Science 2020-10-13 Nikola Milosevic , Gangamma Kalappa , Hesam Dadafarin , Mahmoud Azimaee , Goran Nenadic