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Bacteria are ubiquitous in our daily lives, either as motile planktonic cells or as immobilized surface-attached biofilms. These different phenotypic states play key roles in agriculture, environment, industry, and medicine; hence, it is…

Populations and Evolution · Quantitative Biology 2021-12-07 Jenna A. Ott , Selena Chiu , Daniel B. Amchin , Tapomoy Bhattacharjee , Sujit S. Datta

Oscillatory dynamics are ubiquitous in biological networks. Possible sources of oscillations are well understood in low-dimensional systems, but have not been fully explored in high-dimensional networks. Here we study large networks…

Disordered Systems and Neural Networks · Physics 2016-12-21 Célian Bimbard , Erwan Ledoux , Srdjan Ostojic

We classify the local bifurcations of one dov quantum billiards, showing that only saddle-center bifurcations can occur. We analyze the resulting planar system when there is no coupling in the superposition state. In so doing, we also…

Chaotic Dynamics · Physics 2015-06-26 Mason A. Porter , Richard L. Liboff

We investigate the bifurcation phenomena for stochastic systems with multiplicative Gaussian noise, by examining qualitative changes in mean phase portraits. Starting from the Fokker-Planck equation for the probability density function of…

Dynamical Systems · Mathematics 2018-11-14 Hui Wang , Athanasios Tsiairis , Jinqiao Duan

We consider heteroclinic attractor networks motivated by models of competition between neural populations during binocular rivalry. We show that Gamma distributions of dominance times observed experimentally in binocular rivalry and other…

Dynamical Systems · Mathematics 2018-11-14 Amadeu Delshams , Antoni Guillamon , Gemma Huguet

We investigate dynamics and bifurcations in a mathematical model that captures electrochemical experiments on arrays of microelectrodes. In isolation, each individual microelectrode is described by a one-dimensional unit with a bistable…

Adaptation and Self-Organizing Systems · Physics 2021-12-08 Munir Salman , Christian Bick , Katharina Krischer

Molecular Communication (MC) utilizes chemical molecules to transmit information, introducing innovative strategies for pharmaceutical interventions and enhanced immune system monitoring. This paper explores Molecular communication based…

Biomolecules · Quantitative Biology 2024-12-31 Shees Zulfiqar , Ozgur B. Akan

Chaos associated with bifurcation makes a new science, but the origin and essence of chaos are not yet clear. Based on the well-known logistic map, chaos used to be regarded as intrinsic randomicity of determinate dynamics systems. However,…

Physics and Society · Physics 2017-07-13 Yanguang Chen

Motility induced phase separation is an efficient aggregation mechanism of active matter, yet biological systems exhibit richer organization through communication among constituents. We investigate suspensions of active particles that…

Soft Condensed Matter · Physics 2025-08-18 Yuxin Zhou , Qingqing Yin , Shubhadip Nayak , Poulami Bag , Pulak K. Ghosh , Yunyun Li , Fabio Marchesoni

We propose a model of multispecies populations surviving on distributed resources. System dynamics are investigated under changes in abiotic factors such as the climate, as parameterized through environmental temperature. In particular, we…

Populations and Evolution · Quantitative Biology 2017-10-25 I. Sudakov , S. A. Vakulenko , D. Kirievskaya , K. M. Golden

In this work, a machine learning approach for identifying the multi-omics metabolic regulatory control circuits inside the pathways is described. Therefore, the identification of bacterial metabolic pathways that are more regulated than…

Molecular Networks · Quantitative Biology 2024-04-09 Francesco Bardozzo , Pietro Lio' , Roberto Tagliaferri

We propose and analyze a nonlinear dynamic model of continuous-time multi-dimensional belief formation over signed social networks. Our model accounts for the effects of a structured belief system, self-appraisal, internal biases, and…

Physics and Society · Physics 2024-07-04 Anastasia Bizyaeva , Alessio Franci , Naomi Ehrich Leonard

We present a proof-of-concept of a model comparison approach for analyzing spatio-temporal observations of interacting populations. Our model variants are a collection of structurally similar Bayesian networks. Their distinct Noisy-Or…

Methodology · Statistics 2024-10-08 Nat Kendal-Freedman , Joseph Victor Fiorillo Meleshko , Aaron Yip , Brian Ingalls

We study bifurcations in a spatially extended nonlinear system representing population dynamics with the help of analytic calculations based on the time-independent Schr\"{o}dinger equation for a quantum particle subjected to a uniform…

Adaptation and Self-Organizing Systems · Physics 2008-11-17 Niraj Kumar , V. M. Kenkre

We study the dynamics of belief formation on multiple interconnected topics in networks of agents with a shared belief system. We establish sufficient conditions and necessary conditions under which sustained oscillations of beliefs arise…

Optimization and Control · Mathematics 2023-03-24 Anastasia Bizyaeva , Alessio Franci , Naomi Ehrich Leonard

Living organisms rely on molecular networks, such as gene circuits and signaling pathways, for information processing and robust decision-making in crowded, noisy environments. Recent advances show that interacting biomolecules…

Asymptotic state of an open quantum system can undergo qualitative changes upon small variation of system parameters. We demonstrate it that such 'quantum bifurcations' can be appropriately defined and made visible as changes in the…

Quantum Physics · Physics 2017-11-17 M. Ivanchenko , E. Kozinov , V. Volokitin , A. Liniov , I. Meyerov , S. Denisov

Controllability properties are studied for control-affine systems depending on a parameter and with constrained control values. The uncontrolled systems in dimension two and three are subject to a homoclinic bifurcation. This generates two…

Optimization and Control · Mathematics 2022-12-13 Fritz Colonius , Amani Hasan , Gholam Reza Rokni Lamouki

Biomedical signals carry signature rhythms of complex physiological processes that control our daily bodily activity. The properties of these rhythms indicate the nature of interaction dynamics among physiological processes that maintain a…

Machine Learning · Computer Science 2020-12-14 Yassin Khalifa , Danilo Mandic , Ervin Sejdić

In this paper, dynamical systems theory and bifurcation theory are applied to investi- gate the rich dynamical behaviours observed in three simple disease models. The 2- and 3-dimensional models we investigate have arisen in previous…

Dynamical Systems · Mathematics 2015-04-22 Wenjing Zhang , Pei Yu , Lindi M. Wahl
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