Related papers: Constructing $k$-ary Orientable Sequences with Asy…
This paper presents two new deterministic algorithms for constructing consensus trees. Given an input of k phylogenetic trees with identical leaf label sets and n leaves each, the first algorithm constructs the majority rule (+) consensus…
We consider the well-studied pattern counting problem: given a permutation $\pi \in \mathbb{S}_n$ and an integer $k > 1$, count the number of order-isomorphic occurrences of every pattern $\tau \in \mathbb{S}_k$ in $\pi$. Our first result…
In a graph $G$, a subset of vertices $S \subseteq V(G)$ is said to be cyclable if there is a cycle containing the vertices in some order. $G$ is said to be $k$-cyclable if any subset of $k \geq 2$ vertices is cyclable. If any $k$…
The decision tree is one of the most fundamental programming abstractions. A commonly used type of decision tree is the alphabetic binary tree, which uses (without loss of generality) ``less than'' versus ''greater than or equal to'' tests…
Let T d (n) be the set of d-ary rooted trees with n internal nodes. We give a method to construct a sequence (t n , n $\ge$ 0) where, for any n $\ge$ 1, t n has the uniform distribution in T d (n), and t n is constructed from t n--1 by the…
The problem of constructing optimal factoring automata arises in the context of unification factoring for the efficient execution of logic programs. Given an ordered set of $n$ strings of length $m$, the problem is to construct a trie-like…
Categorical sequence clustering plays a crucial role in various fields, but the lack of interpretability in cluster assignments poses significant challenges. Sequences inherently lack explicit features, and existing sequence clustering…
We study the problem of enumerating the $k$-arc-connected orientations of a graph $G$, i.e., generating each exactly once. A first algorithm using submodular flow optimization is easy to state, but intricate to implement. In a second…
A key principle in string processing is local consistency: using short contexts to handle matching fragments of a string consistently. String synchronizing sets [Kempa, Kociumaka; STOC 2019] are an influential instantiation of this…
A heapable sequence is a sequence of numbers that can be arranged in a "min-heap data structure". Finding a longest heapable subsequence of a given sequence was proposed by Byers, Heeringa, Mitzenmacher, and Zervas (ANALCO 2011) as a…
Given query access to an undirected graph $G$, we consider the problem of computing a $(1\pm\epsilon)$-approximation of the number of $k$-cliques in $G$. The standard query model for general graphs allows for degree queries, neighbor…
Cyclic codes, as a crucial subclass of linear codes, exhibit broad applications in communication systems, data storage systems, and consumer electronics, primarily attributed to their well-structured algebraic properties. Let $p$ denote an…
In many applications of clustering (for example, ontologies or clusterings of animal or plant species), hierarchical clusterings are more descriptive than a flat clustering. A hierarchical clustering over $n$ elements is represented by a…
We consider rate R = k/n causal linear codes that map a sequence of k-dimensional binary vectors {b_t} to a sequence of n-dimensional binary vectors {c_t}, such that each c_t is a function of {b_1,b_2,...,b_t}. Such a code is called anytime…
Correlation measure of order $k$ is an important measure of randomness in binary sequences. This measure tries to look for dependence between several shifted version of a sequence. We study the relation between the correlation measure of…
A tree with at most $k$ leaves is called a $k$-ended tree. A spanning 2-ended tree is a Hamilton path. A Hamilton cycle can be considered as a spanning 1-ended tree. The earliest result concerning spanning trees with few leaves states that…
Elementary cellular automata deterministically map a binary sequence to another using simple local rules. Visualizing the structure of this mapping is difficult because the number of nodes (i.e. possible binary sequences) grows…
A Skolem sequence is a linear arrangement of the multiset, {1, 1, 2, 2, ..., n, n} such that if r in [n] appears in positions i and j, then |i-j| = r. We first translate the problem to a particular set of perfect matchings, then apply the…
We construct orthogonal arrays OA$_{\lambda} (k,n)$ (of strength two) having a row that is repeated $m$ times, where $m$ is as large as possible. In particular, we consider OAs where the ratio $m / \lambda$ is as large as possible; these…
A graph is $k$-clique-extendible if there is an ordering of the vertices such that whenever two $k$-sized overlapping cliques $A$ and $B$ have $k-1$ common vertices, and these common vertices appear between the two vertices $a,b\in…