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Quantum computation and quantum simulation require a versatile gate set to optimize circuit compilation for practical applications. However, existing platforms are often limited to specific gate types or rely on parametric couplers to…

Quantum Physics · Physics 2026-02-03 Guangze Chen , Anton Frisk Kockum

At the core of high throughput DNA sequencing platforms lies a bio-physical surface process that results in a random geometry of clusters of homogenous short DNA fragments typically hundreds of base pairs long - bridge amplification. The…

Genomics · Quantitative Biology 2015-08-13 Eliza O'Reilly , Francois Baccelli , Gustavo de Veciana , Haris Vikalo

Geometric phases are robust against certain types of local noises, and thus provide a promising way towards high-fidelity quantum gates. However, comparing with the dynamical ones, previous implementations of nonadiabatic geometric quantum…

Quantum Physics · Physics 2021-06-09 Sai Li , Jing Xue , Tao Chen , Zheng-Yuan Xue

Quantum computation with quantum gates induced by geometric phases is regarded as a promising strategy in fault tolerant quantum computation, due to its robustness against operational noises. However, because of the parametric restriction…

Nanoscale amplification of non-linear processes in solid-state devices opens novel applications in nano-electronics, nano-medicine or high energy conversion for example. Coupling few nano-joules laser energy at a nanometer scale for strong…

Single-qubit operations on singlet-triplet qubits in GaAs double quantum dots have not yet reached the fidelities required for fault-tolerant quantum information processing. Considering experimentally important constraints and using…

Quantum Physics · Physics 2021-01-25 Pascal Cerfontaine , Tim Botzem , David P. DiVincenzo , Hendrik Bluhm

We re-investigate a fundamental question: how effective is crossover in Genetic Algorithms in combining building blocks of good solutions? Although this has been discussed controversially for decades, we are still lacking a rigorous and…

Neural and Evolutionary Computing · Computer Science 2014-11-27 Dirk Sudholt

String barcoding is a recently introduced technique for genomic-based identification of microorganisms. In this paper we describe the engineering of highly scalable algorithms for robust string barcoding. Our methods enable distinguisher…

Data Structures and Algorithms · Computer Science 2016-08-31 Bhaskar DasGupta , Kishori M. Konwar , Ion I. Mandoiu , Alex A. Shvartsman

Genome assembly, the process of reconstructing a long genetic sequence by aligning and merging short fragments, or reads, is known to be NP-hard, either as a version of the shortest common superstring problem or in a Hamiltonian-cycle…

Statistical Mechanics · Physics 2024-03-12 L. A. Fernandez , V. Martin-Mayor , D. Yllanes

We propose and validate on real quantum computing hardware a new method for extended two-qubit gate set design, replacing iterative, fine calibration with fast characterization of a small number of gate parameters which are then tracked and…

Geometric gates that use the global property of the geometric phase is believed to be a powerful tool to realize fault-tolerant quantum computation. However, for singlet-triplet qubits in semiconductor quantum dot, the low Rabi frequency of…

Quantum Physics · Physics 2022-03-23 Mei-Ya Chen , Chengxian Zhang , Zheng-Yuan Xue

A grand challenge of nanoscience is to master the control of structure and properties in order to go beyond present day functionality. The creation of nanostructures via atom manipulation by means of a scanning probe represents one of the…

Mesoscale and Nanoscale Physics · Physics 2012-09-11 R. X. Cao , B. F. Miao , Z. F. Zhong , L. Sun , B. You , W. Zhang , D. Wu , An Hu , S. D. Bader , H. F. Ding

High-fidelity quantum gates are essential for large-scale quantum computation, which can naturally be realized in a noise-resilient way. Geometric manipulation and decoherence-free subspace encoding are promising ways toward robust quantum…

Quantum Physics · Physics 2019-08-20 Zhennan Zhu , Tao Chen , Xiaodong Yang , Ji Bian , Zheng-Yuan Xue , Xinhua Peng

We present a fully device-resident, multi-GPU architecture for the large-scale computational verification of Goldbach's conjecture. In prior work, a segmented double-sieve eliminated monolithic VRAM bottlenecks but remained constrained by…

Mathematical Software · Computer Science 2026-03-10 Isaac Llorente-Saguer

We present an unique way to detect basepair mismatches in DNA leading to different epigenetic disorder by the method of nanopore sequencing. Based on a tight-binding formulation of graphene nanopore based device, using Greens function…

Mesoscale and Nanoscale Physics · Physics 2016-02-26 Sourav Kundu , S. N. Karmakar

Quantum circuit simulation is paramount to the verification and optimization of quantum algorithms, and considerable research efforts have been made towards efficient simulators. While circuits often contain high-level gates such as oracles…

Quantum Physics · Physics 2026-05-06 Adam Husted Kjelstrøm , Andreas Pavlogiannis , Jaco van de Pol

We present an accreditation protocol for the outputs of noisy intermediate-scale quantum devices. By testing entire circuits rather than individual gates, our accreditation protocol can provide an upper-bound on the variation distance…

Quantum Physics · Physics 2019-11-21 Samuele Ferracin , Theodoros Kapourniotis , Animesh Datta

Recent work identified the fundamental limits on the information requirements in terms of read length and coverage depth required for successful de novo genome reconstruction from shotgun sequencing data, based on the idealistic assumption…

Genomics · Quantitative Biology 2014-02-28 Ka-Kit Lam , Asif Khalak , David Tse

Quantum circuit synthesis and compilation are critical components in the quantum computing stack, both for contemporary quantum systems, where efficient use of limited resources is essential, as well as for large-scale fault-tolerant…

Quantum Physics · Physics 2025-10-21 Jonathan Nemirovsky , Maya Chuchem , Lee Peleg , Yakov Solomons , Amit Ben Kish , Yotam Shapira

Arrays of optically trapped neutral atoms are a promising architecture for the realization of quantum computers. In order to run increasingly complex algorithms, it is advantageous to demonstrate high-fidelity and flexible gates between…

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