Related papers: Validation of Golden Gate assemblies using highly …
DNA self-assembly is an important tool that has a wide range of applications such as building nanostructures, the transport of target virotherapies, and nano-circuitry. Tools from graph theory can be used to encode the biological process of…
We propose an efficient protocol to fully reconstruct a set of high-fidelity quantum gates. Usually, the efficiency of reconstructing high-fidelity quantum gates is limited by the sampling noise. Our protocol is based on a perturbative…
Geometric phases are robust to local noises and the nonadiabatic ones can reduce the evolution time, thus nonadiabatic geometric gates have strong robustness and can approach high fidelity. However, the advantage of geometric phase has not…
Long reads produced by third-generation sequencing technologies are used to construct an assembly (i.e., the subject's genome), which is further used in downstream genome analysis. Unfortunately, long reads have high sequencing error rates…
Explicit controlled-NOT gate sequences between two qubits of different types are presented in view of applications for large-scale quantum computation. Here, the building blocks for such composite systems are qubits based on the…
The way to infer well-supported phylogenetic trees that precisely reflect the evolutionary process is a challenging task that completely depends on the way the related core genes have been found. In previous computational biology studies,…
Molecular self-assembly will not become a routine method for building nanomaterials unless our ability to predict the outcome of this process is dramatically improved. Even then, reliable strategies for realizing molecular assemblies with…
Topological quantum computation is an implementation of a quantum computer in a way that radically reduces decoherence. Topological qubits are encoded in the topological evolution of two-dimensional quasi-particles called anyons and…
Current implementations of superconducting qubits are often limited by the low fidelities of multi-qubit gates. We present a reproducible and runtime-efficient pulse-level approach for calibrating an improved cross-resonance gate…
Duplicate marking is a critical preprocessing step in gene sequence analysis to flag redundant reads arising from polymerase chain reaction(PCR) amplification and sequencing artifacts. Although Picard MarkDuplicates is widely recognized as…
Trapped ions as one of the most promising quantum-information-processing platforms, yet conventional entangling gates mediated by collective motion remain slow and difficult to scale. Exciting trapped ions to high-lying electronic Rydberg…
The understanding of inorganic reactions, especially those far from the equilibrium state, is relatively limited due to their inherent complexity. Poor understandings on the underlying synthetic chemistry have constrained the design of…
Geometric phases are well known to be noise-resilient in quantum evolutions/operations. Holonomic quantum gates provide us with a robust way towards universal quantum computation, as these quantum gates are actually induced by nonabelian…
Distributed quantum computation is the key to high volume computation in the NISQ era. This investigation explores the key aspects necessary for the construction of a quantum network by numerically simulating the execution of the…
Nanopore based sequencing has demonstrated significant potential for the development of fast, accurate, and cost-efficient fingerprinting techniques for next generation molecular detection and sequencing. We propose a specific multi-layered…
Geometric phase is an indispensable element for achieving robust and high-fidelity quantum gates due to its built-in noise-resilience feature. However, due to the complexity of manipulation and the intrinsic leakage of the encoded quantum…
Solid-state nanopores are emerging platforms for single-molecule protein sequencing due to their tolerance to hash physiology environment and compatibility with different electrical and optical detection methods. However, they suffer from…
DNA has many valuable characteristics that make it suitable for a long-term storage medium, in particular its durability and high information density. DNA can be stored safely for hundreds of years with virtually no degradation, in contrast…
We study the group test for DNA library screening based on probabilistic approach. Group test is a method of detecting a few positive items from among a large number of items, and has wide range of applications. In DNA library screening,…
In recent years there have been a number of proposals to utilize the specificity of DNA based interactions for potential applications in nanoscience. One interesting direction is the self-assembly of micro- and nanoparticle clusters using…