English

Detection of basepair mismatches in DNA using graphene based nanopore device

Mesoscale and Nanoscale Physics 2016-02-26 v2

Abstract

We present an unique way to detect basepair mismatches in DNA leading to different epigenetic disorder by the method of nanopore sequencing. Based on a tight-binding formulation of graphene nanopore based device, using Greens function approach we measure the changes in the electronic transport properties of the device as we translocate a double-stranded DNA through the nanopore embeded in a zigzag graphene nanoribbon. In the present work we not only successfully detect the usual AT and GC pairs, but also a set of possible mismatches in the complementary base-pairing without any ambiguity. Our investigation shows that this device can also be used for reliable sequential detection of other biomolecules.

Keywords

Cite

@article{arxiv.1508.07787,
  title  = {Detection of basepair mismatches in DNA using graphene based nanopore device},
  author = {Sourav Kundu and S. N. Karmakar},
  journal= {arXiv preprint arXiv:1508.07787},
  year   = {2016}
}

Comments

Accepted in Nanotechnology, 12 pages, 7 figures