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Knowledge graphs (KGs) composed of users, objects, and tags are widely used in web applications ranging from E-commerce, social media sites to news portals. This paper concentrates on an attractive application which aims to predict the…

Information Retrieval · Computer Science 2020-07-17 Chenyang Li , Xu Chen , Ya Zhang , Siheng Chen , Dan Lv , Yanfeng Wang

The recent focus on microbes in human medicine highlights their potential role in the genetic framework of diseases. To decode the complex interactions among genes, microbes, and diseases, computational predictions of gene-microbe-disease…

Machine Learning · Computer Science 2024-06-28 Kexin Zhang , Feng Huang , Luotao Liu , Zhankun Xiong , Hongyu Zhang , Yuan Quan , Wen Zhang

Graph data is omnipresent and has a wide variety of applications, such as in natural science, social networks, or the semantic web. However, while being rich in information, graphs are often noisy and incomplete. As a result, graph…

Artificial Intelligence · Computer Science 2023-09-01 Luisa Werner , Nabil Layaïda , Pierre Genevès , Sarah Chlyah

In large population-based studies and in clinical routine, tasks like disease diagnosis and progression prediction are inherently based on a rich set of multi-modal data, including imaging and other sensor data, clinical scores, phenotypes,…

Computer Vision and Pattern Recognition · Computer Science 2018-04-02 Gerome Vivar , Andreas Zwergal , Nassir Navab , Seyed-Ahmad Ahmadi

Graph data structures are widely used to store relational information between several entities. With data being generated worldwide on a large scale, we see a significant growth in the generation of knowledge graphs. Thing in the future is…

Artificial Intelligence · Computer Science 2023-10-24 Rohith Teja Mittakola , Thomas Hassan

Knowledge graph-based dialogue systems can narrow down knowledge candidates for generating informative and diverse responses with the use of prior information, e.g., triple attributes or graph paths. However, most current knowledge graph…

Computation and Language · Computer Science 2020-04-21 Hongcai Xu , Junpeng Bao , Junqing Wang

In the field of representation learning on knowledge graphs (KGs), a hyper-relational fact consists of a main triple and several auxiliary attribute-value descriptions, which is considered more comprehensive and specific than a triple-based…

Artificial Intelligence · Computer Science 2023-10-17 Haoran Luo , Haihong E , Ling Tan , Gengxian Zhou , Tianyu Yao , Kaiyang Wan

Knowledge graphs (KGs), as structured representations of real world facts, are intelligent databases incorporating human knowledge that can help machine imitate the way of human problem solving. However, KGs are usually huge and there are…

Machine Learning · Computer Science 2023-06-27 Haotian Li , Hongri Liu , Yao Wang , Guodong Xin , Yuliang Wei

Drug repositioning-a promising strategy for discovering new therapeutic uses for existing drugs-has been increasingly explored in the computational science literature using biomedical databases. However, the technological potential of drug…

Artificial Intelligence · Computer Science 2024-07-25 Yongseung Jegal , Jaewoong Choi , Jiho Lee , Ki-Su Park , Seyoung Lee , Janghyeok Yoon

Knowledge graphs are powerful tools for representing and organising complex biomedical data. Several knowledge graph embedding algorithms have been proposed to learn from and complete knowledge graphs. However, a recent study demonstrates…

Drug repurposing is more relevant than ever due to drug development's rising costs and the need to respond to emerging diseases quickly. Knowledge graph embedding enables drug repurposing using heterogeneous data sources combined with…

Real-world Knowledge Graphs (KGs) often suffer from incompleteness, which limits their potential performance. Knowledge Graph Completion (KGC) techniques aim to address this issue. However, traditional KGC methods are computationally…

Computation and Language · Computer Science 2023-11-03 Alla Chepurova , Aydar Bulatov , Yuri Kuratov , Mikhail Burtsev

Knowledge graphs (KGs) consisting of triples are always incomplete, so it's important to do Knowledge Graph Completion (KGC) by predicting missing triples. Multi-Source KG is a common situation in real KG applications which can be viewed as…

Computation and Language · Computer Science 2020-10-27 Mingyang Chen , Wen Zhang , Zonggang Yuan , Yantao Jia , Huajun Chen

Knowledge graph (KG) embedding encodes the entities and relations from a KG into low-dimensional vector spaces to support various applications such as KG completion, question answering, and recommender systems. In real world, knowledge…

Databases · Computer Science 2022-06-02 Tianxing Wu , Arijit Khan , Melvin Yong , Guilin Qi , Meng Wang

Knowledge Graphs (KGs) provide a structured representation of knowledge but often suffer from challenges of incompleteness. To address this, link prediction or knowledge graph completion (KGC) aims to infer missing new facts based on…

Machine Learning · Computer Science 2025-01-03 Wenkai Tu , Guojia Wan , Zhengchun Shang , Bo Du

Knowledge graphs (KGs) that modelings the world knowledge as structural triples are inevitably incomplete. Such problems still exist for multimodal knowledge graphs (MMKGs). Thus, knowledge graph completion (KGC) is of great importance to…

Artificial Intelligence · Computer Science 2022-09-16 Yichi Zhang , Wen Zhang

Knowledge graph embeddings (KGE) apply machine learning methods on knowledge graphs (KGs) to provide non-classical reasoning capabilities based on similarities and analogies. The learned KG embeddings are typically used to answer queries by…

Artificial Intelligence · Computer Science 2025-01-28 Yuqicheng Zhu , Nico Potyka , Jiarong Pan , Bo Xiong , Yunjie He , Evgeny Kharlamov , Steffen Staab

The quality assurance of the knowledge graph is a prerequisite for various knowledge-driven applications. We propose KGClean, a novel cleaning framework powered by knowledge graph embedding, to detect and repair the heterogeneous dirty…

Databases · Computer Science 2020-05-01 Congcong Ge , Yunjun Gao , Honghui Weng , Chong Zhang , Xiaoye Miao , Baihua Zheng

A computational challenge to validate the candidate disease genes identified in a high-throughput genomic study is to elucidate the associations between the set of candidate genes and disease phenotypes. The conventional gene set enrichment…

Genomics · Quantitative Biology 2011-02-22 TaeHyun Hwang , Wei Zhang , Maoqiang Xie , Rui Kuang

Graph convolutional networks (GCNs) -- which are effective in modeling graph structures -- have been increasingly popular in knowledge graph completion (KGC). GCN-based KGC models first use GCNs to generate expressive entity representations…

Artificial Intelligence · Computer Science 2022-02-14 Zhanqiu Zhang , Jie Wang , Jieping Ye , Feng Wu
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