English
Related papers

Related papers: Simplified calcium signaling cascade for synaptic …

200 papers

A simple model for simulating flows of active suspensions is investigated. The approach is based on dissipative particle dynamics. While the model is potentially applicable to a wide range of self-propelled particle systems, the specific…

Fluid Dynamics · Physics 2015-10-08 Denis F. Hinz , Alexander Panchenko , Tae-Yeon Kim , Eliot Fried

In this work, we propose a simple yet effective solution to the problem of connectome inference in calcium imaging data. The proposed algorithm consists of two steps. First, processing the raw signals to detect neural peak activities.…

An analytical framework is proposed to describe the elasticity, viscosity and fragility of metallic glasses in relation to their atomic-level structure and the effective interatomic interaction. The bottom-up approach starts with forming an…

Soft Condensed Matter · Physics 2016-08-15 Alexandra E. Lagogianni , Johannes Krausser , Zach Evenson , Konrad Samwer , A Zaccone

We use a biophysical model of a local neuronal circuit to study the implications of synaptic plasticity for the detection of weak sensory stimuli. Networks with fast plastic coupling show behavior consistent with stochastic resonance.…

Neurons and Cognition · Quantitative Biology 2009-11-13 Vladislav Volman , Herbert Levine

Two elements of neural information processing have primarily been proposed: firing rate and spike timing of neurons. In the case of synaptic plasticity, although spike-timing-dependent plasticity (STDP) depending on presynaptic and…

Neurons and Cognition · Quantitative Biology 2020-01-14 Katsuhiko Hata , Osamu Araki , Osamu Yokoi , Tatsumi Kusakabe , Yoshio Yamamoto , Susumu Ito , Tetsuro Nikuni

Solute trapping is an important phenomenon in rapid solidification of alloys, for which the continuous growth model (CGM) is a popular sharp interface theory. Using matched asymptotic analysis, we show how to quantitatively map the sharp…

Materials Science · Physics 2018-09-17 Tatu Pinomaa , Nikolas Provatas

Unicellular organisms are open metabolic systems that need to process information about their external environment in order to survive. In most types of tissues and organisms, cells use calcium signaling to carry information from the…

In the mammalian brain newly acquired memories depend on the hippocampus for maintenance and recall, but over time these functions are taken over by the neocortex through a process called systems consolidation. However, reactivation of a…

Neurons and Cognition · Quantitative Biology 2019-03-29 Peter Helfer , Thomas R. Shultz

Learning is based on synaptic plasticity, which affects and is driven by neural activity. Because pre- and postsynaptic spiking activity is shaped by randomness, the synaptic weights follow a stochastic process, requiring a probabilistic…

Neurons and Cognition · Quantitative Biology 2026-01-14 Jakob Stubenrauch , Naomi Auer , Richard Kempter , Benjamin Lindner

Synaptic plasticity depends on the interaction between electrical activity in neurons and the synaptic proteome, the collection of over 1000 proteins in the post-synaptic density (PSD) of synapses. To construct models of synaptic plasticity…

Neurons and Cognition · Quantitative Biology 2014-11-19 David C. Sterratt , Oksana Sorokina , J. Douglas Armstrong

In this work, we propose an asymptotic preserving scheme for a non-linear kinetic reaction-transport equation, in the regime of sharp interface. With a non-linear reaction term of KPP-type, a phenomenon of front propagation has been proved…

Numerical Analysis · Mathematics 2018-05-23 Hélène Hivert

A fundamental challenge in calcium imaging has been to infer the timing of action potentials from the measured noisy calcium fluorescence traces. We systematically evaluate a range of spike inference algorithms on a large benchmark dataset…

Spike-Timing-Dependent Plasticity (STDP) provides a biologically grounded learning rule for spiking neural networks (SNNs), but its reliance on precise spike timing and pairwise updates limits fast learning of weights. We introduce a…

Neural and Evolutionary Computing · Computer Science 2026-01-14 Gouri Lakshmi S , Athira Chandrasekharan , Harshit Kumar , Muhammed Sahad E , Bikas C Das , Saptarshi Bej

Neuromorphic chip refers to an unconventional computing architecture that is modelled on biological brains. It is ideally suited for processing sensory data for intelligence computing, decision-making or context cognition. Despite rapid…

Emerging Technologies · Computer Science 2016-09-09 Shuchao Qin , Fengqiu Wang , Yujie Liu , Qing Wan , Xinran Wang , Yongbing Xu , Yi Shi , Xiaomu Wang , Rong Zhang

Traditional neural networks, while powerful, rely on biologically implausible learning mechanisms such as global backpropagation. This paper introduces the Structurally Adaptive Predictive Inference Network (SAPIN), a novel computational…

Neural and Evolutionary Computing · Computer Science 2026-02-11 Brennen A. Hill

Sleep is thought to support memory consolidation and the recovery of optimal energetic regime by reorganizing synaptic connectivity, yet how plasticity across hierarchical brain circuits contributes to abstraction and energy efficiency…

This paper proposes a neuronal circuitry layout and synaptic plasticity principles that allow the (pyramidal) neuron to act as a "combinatorial switch". Namely, the neuron learns to be more prone to generate spikes given those combinations…

Biological Physics · Physics 2017-05-09 Marat M. Rvachev

The potential of memristive devices is often seeing in implementing neuromorphic architectures for achieving brain-like computation. However, the designing procedures do not allow for extended manipulation of the material, unlike CMOS…

Emerging Technologies · Computer Science 2016-04-25 Shari Lim Wei , Eleni Vasilaki , Ali Khiat , Iulia Salaoru , Radu Berdan , Themistoklis Prodromakis

Amorphous calcium carbonate (ACC) has been widely found in biomineralization, both as a transient precursor and a stable phase, but how organisms accurately control its formation and crystallization pathway remains unclear. Here, we aim to…

We study coherent perfect absorption (CPA) theoretically based on a weakly coupled atom-cavity system with an optically pumped second-order nonlinear crystal (SOC) embedded in the cavity. Our system does not require a strong coupling, which…

Quantum Physics · Physics 2020-06-19 Wei Xiong , Jiaojiao Chen , Baolong Fang , Chi-Hang Lam , J. Q. You