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Depletion forces play a role in the compaction and de-compation of chromosomal material in simple cells but it remains debatable whether they are sufficient to account for chromosomal collapse. We present coarse-grained molecular dynamics…

Soft Condensed Matter · Physics 2015-06-22 Tyler N. Shendruk , Martin Bertrand , Hendrick W. de Haan , James L. Harden , Gary W. Slater

Atoms are ideal quantum sensors and quantum light emitters. Interfacing atoms with nanophotonic devices promises novel nanoscale sensing and quantum optical functionalities. But precise optical control of atomic states in these devices is…

Plasticity is one of the most important properties of the nervous system, which enables animals to adjust their behavior to the ever-changing external environment. Changes in synaptic efficacy between neurons constitute one of the major…

Neurons and Cognition · Quantitative Biology 2018-01-23 Taishi Iwasaki , Hideitsu Hino , Masami Tatsuno , Shotaro Akaho , Noboru Murata

The study is devoted to the geometrically nonlinear simulation of fiber-reinforced composite structures. The applicability of the multiplicative approach to the simulation of viscoelastic properties of a composite material is assessed,…

Applied Physics · Physics 2021-03-15 I. I. Tagiltsev , P. P. Laktionov , A. V. Shutov

Sparse coding algorithms trained on natural images can accurately predict the features that excite visual cortical neurons, but it is not known whether such codes can be learned using biologically realistic plasticity rules. We have…

Neurons and Cognition · Quantitative Biology 2011-11-01 Joel Zylberberg , Jason Timothy Murphy , Michael Robert DeWeese

Photoacoustic imaging and sensing have been studied extensively to probe the optical absorption of biological tissue in multiple scales ranging from large organs to small molecules. However, its elastic oscillation characterization is…

Optics · Physics 2015-09-21 Fei Gao , Xiaohua Feng , Yuanjin Zheng

We present the APLIP process (Adiabatic Passage by Light Induced Potentials) for the adiabatic transfer of a wave packet from one molecular potential to the displaced ground vibrational state of another. The process uses an intermediate…

Chemical Physics · Physics 2009-10-30 B. M. Garraway , K. -A. Suominen

Cortical oscillations are thought to be involved in many cognitive functions and processes. Several mechanisms have been proposed to regulate oscillations. One prominent but understudied mechanism is gap-junctional coupling. Gap junctions…

Neurons and Cognition · Quantitative Biology 2018-07-04 Guillaume Pernelle , Wilten Nicola , Claudia Clopath

We investigate the nonlinear optical response of suspended 1D photonic crystal nanocavities fabricated on a silicon nitride chip. Strong thermo-optical nonlinearities are demonstrated for input powers as low as $2\,\mu\text{W}$ and a…

A symmetrical structure consisting of a low refractive index dielectric layer between two metallic films, i.e. an optical cavity, surrounded by a semi-infinite dielectric medium of higher refractive index, forms an optical system capable of…

Optics · Physics 2025-05-06 Alejandro Doval , Yago Arosa , Raúl de la Fuente

Calmodulin, the ubiquitous calcium-activated second messenger in eukaryotes, is an extremely versatile molecule involved in many biological processes: muscular contraction, synaptic plasticity, circadian rhythm, and cell cycle, among…

Molecular Networks · Quantitative Biology 2015-06-19 Massimo Lai , Denis Brun , Stuart J Edelstein , Nicolas Le Novère

In long-term potentiation (LTP), one of the most studied types of neural plasticity, synaptic strength is persistently increased in response to stimulation. Although a number of different proteins have been implicated in the sub-cellular…

Neurons and Cognition · Quantitative Biology 2019-06-11 Peter Helfer , Thomas R. Shultz

The synthetic actin network arouses great interest as bio-material due to its soft and wet nature that mimics many biological scaffolding structures. Inside the cell, the actin network is regulated by tens of actin-binding proteins (ABP's),…

Soft Condensed Matter · Physics 2019-03-19 Horacio Lopez-Menendez

An optical trapping scheme is proposed by which ultrashort low-amplitude radiations, co-propagating with a continuous train of temporal pulses in a hollow-core photonic crystal fiber filled with Raman-inactive noble gases, can be trapped…

We study quasi-freestanding bilayer graphene on silicon carbide intercalated by calcium. The intercalation, and subsequent changes to the system, were investigated by low-energy electron diffraction, angle-resolved photoemission…

Competitive dynamics are thought to occur in many processes of learning involving synaptic plasticity. Here we show, in a game theory-inspired model of synaptic interactions, that the competition between synapses in their weak and strong…

Disordered Systems and Neural Networks · Physics 2015-05-28 Gaurang Mahajan , Anita Mehta

The viscous drag on a colloidal particle pulled through solution by an optical trap is large enough that on experimentally relavant time scales the mechanical force exerted by the trap is equal and op- posite the viscous drag force. The…

Statistical Mechanics · Physics 2007-05-23 R. Dean Astumian

Traditional computation based on von Neumann architecture is limited by the time and energy consumption due to data transfer between the storage and the processing units. The von Neumann architecture is also inefficient in solving…

Emerging Technologies · Computer Science 2023-01-04 Dheemahi Rao , Bivas Saha

We use a simple mode-coupling approach to investigate glassy dynamics of partially pinned fluid systems. Our approach is different from the mode-coupling theory developed by Krakoviack [Phys. Rev. Lett. 94, 065703 (2005), Phys. Rev. E 84,…

Disordered Systems and Neural Networks · Physics 2015-06-04 Grzegorz Szamel , Elijah Flenner

Within the mode-coupling theory for structural relaxation in simple systems the asymptotic laws and their leading-asymptotic correction formulas are derived for the motion of a tagged particle near a glass-transition singularity. These…

Disordered Systems and Neural Networks · Physics 2016-08-15 M. Fuchs , W. Götze , M. R. Mayr
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