Related papers: On the Extremal Maximum Agreement Subtree Problem
An independent edge set of graph $G$ is a matching, and is maximal if it is not a proper subset of any other matching of $G$. The number of all the maximal matchings of $G$ is denoted by $\Psi(G)$. In this paper, an algorithm to count…
For an undirected tree with $n$ edges labelled by single letters, we consider its substrings, which are labels of the simple paths between pairs of nodes. We prove that there are $O(n^{1.5})$ different palindromic substrings. This solves an…
Let $\T_{n}$ be the set of rooted labeled trees on $\set{0,...,n}$. A maximal decreasing subtree of a rooted labeled tree is defined by the maximal subtree from the root with all edges being decreasing. In this paper, we study a new…
We derive tight bounds on the expected weights of several combinatorial optimization problems for random point sets of size $n$ distributed among the leaves of a balanced hierarchically separated tree. We consider {\it monochromatic} and…
The phylogenetic tree construction is to infer the evolutionary relationship between species from the experimental data. However, the experimental data are often imperfect and conflicting each others. Therefore, it is important to extract…
This note derives asymptotic upper and lower bounds for the number of planted plane trees on $n$ nodes assigned labels from the set $\{1,2,\ldots, k\}$ with the restriction that on any path from the root to a leaf, the labels must strictly…
In the longest plane spanning tree problem, we are given a finite planar point set $\mathcal{P}$, and our task is to find a plane (i.e., noncrossing) spanning tree for $\mathcal{P}$ with maximum total Euclidean edge length. Despite more…
A tree with $n$ vertices has at most $95^{n/13}$ minimal dominating sets. The growth constant $\lambda = \sqrt[13]{95} \approx 1.4194908$ is best possible. It is obtained in a semi-automatic way as a kind of "dominant eigenvalue" of a…
We study that over some types of trees with a given number of vertices, which trees minimize or maximize the total number of subtrees. Trees minimizing (resp. maximizing) the total number of subtrees usually maximize (resp. minimize) the…
The probability that two randomly selected phylogenetic trees of the same size are isomorphic is found to be asymptotic to a decreasing exponential modulated by a polynomial factor. The number of symmetrical nodes in a random phylogenetic…
In this paper, we investigate a conjecture by von Haeseler concerning the Maximum Parsimony method for phylogenetic estimation, which was published by the Newton Institute in Cambridge on a list of open phylogenetic problems in 2007. This…
A good range of problems on trees can be described by the following general setting: Given a bilinear map $*:\mathbb R^d\times\mathbb R^d\to\mathbb R^d$ and a vector $s\in\mathbb R^d$, we need to estimate the largest possible absolute value…
The aim of rendezvous in a graph is meeting of two mobile agents at some node of an unknown anonymous connected graph. In this paper, we focus on rendezvous in trees, and, analogously to the efforts that have been made for solving the…
We consider the polyhedral properties of two spanning tree problems with additional constraints. In the first problem, it is required to find a tree with a minimum sum of edge weights among all spanning trees with the number of leaves less…
Phylogenetic trees are leaf-labelled trees used to model the evolution of species. Here we explore the practical impact of kernelization (i.e. data reduction) on the NP-hard problem of computing the TBR distance between two unrooted binary…
Codes over trees were introduced recently to bridge graph theory and coding theory with diverse applications in computer science and beyond. A central challenge lies in determining the maximum number of labelled trees over $n$ nodes with…
We obtain sharp lower and upper bounds for the number of maximal (under inclusion) independent sets in trees with fixed number of vertices and diameter. All extremal trees are described up to isomorphism.
We introduce a model of register automata over infinite trees with extrema constraints. Such an automaton can store elements of a linearly ordered domain in its registers, and can compare those values to the suprema and infima of register…
A consensus tree is a phylogenetic tree that captures the similarity between a set of conflicting phylogenetic trees. The problem of computing a consensus tree is a major step in phylogenetic tree reconstruction. It also finds applications…
The problem of reconstructing evolutionary trees or phylogenies is of great interest in computational biology. A popular model for this problem assumes that we are given the set of leaves (current species) of an unknown binary tree and the…