Related papers: FPT-algorithms for computing Gromov-Hausdorff and …
Let $G$ be a finite, connected metric graph and let $X\subseteq G$ be a subset. If $X$ is sufficiently dense in $G$, we show that the Gromov--Hausdorff distance matches the Hausdorff distance, namely $d_\gh(G,X)=d_\h(G,X)$. When the metric…
Merge trees are a type of graph-based topological summary that tracks the evolution of connected components in the sublevel sets of scalar functions. They enjoy widespread applications in data analysis and scientific visualization. In this…
We introduce the tree distance, a new distance measure on graphs. The tree distance can be computed in polynomial time with standard methods from convex optimization. It is based on the notion of fractional isomorphism, a characterization…
Due to hybridization events in evolution, studying two different genes of a set of species may yield two related but different phylogenetic trees for the set of species. In this case, we want to measure the dissimilarity of the two trees.…
The subtree prune-and-regraft (SPR) distance metric is a fundamental way of comparing evolutionary trees. It has wide-ranging applications, such as to study lateral genetic transfer, viral recombination, and Markov chain Monte Carlo…
Phylogenetic trees are leaf-labelled trees used to model the evolution of species. In practice it is not uncommon to obtain two topologically distinct trees for the same set of species, and this motivates the use of distance measures to…
Comparing and computing distances between phylogenetic trees are important biological problems, especially for models where edge lengths play an important role. The geodesic distance measure between two phylogenetic trees with edge lengths…
The recently introduced graph parameter tree-cut width plays a similar role with respect to immersions as the graph parameter treewidth plays with respect to minors. In this paper, we provide the first algorithmic applications of tree-cut…
An important problem in geometric computing is defining and computing similarity between two geometric shapes, e.g. point sets, curves and surfaces, etc. Important geometric and topological information of many shapes can be captured by…
Optimal transport provides a metric which quantifies the dissimilarity between probability measures. For measures supported in discrete metric spaces, finding the optimal transport distance has cubic time complexity in the size of the…
In this paper we study several problems concerning the number of homomorphisms of trees. We give an algorithm for the number of homomorphisms from a tree to any graph by the Transfer-matrix method. By using this algorithm and some…
Techniques from metric geometry have become fundamental tools in modern mathematical data science, providing principled methods for comparing datasets modeled as finite metric spaces. Two of the central tools in this area are the…
Temporal sequences of terrains arise in various application areas. To analyze them efficiently, one generally needs a suitable abstraction of the data as well as a method to compare and match them over time. In this paper we consider merge…
Phylogenetic trees summarize evolutionary relationships between organisms, and tools to analyze collections of phylogenetic trees enable contrasts between different genes' ancestry. The BHV metric space has enabled the analysis of…
In the present paper we calculate the Gromov-Hausdorff distance between an arbitrary simplex (a metric space all whose non-zero distances are the same) and a finite metric space whose non-zero distances take two distinct values (so-called…
In this paper, we study Gromov hyperbolicity and related parameters, that represent how close (locally) a metric space is to a tree from a metric point of view. The study of Gromov hyperbolicity for geodesic metric spaces can be reduced to…
The graph invariant EPT-sum has cropped up in several unrelated fields in later years: As an objective function for hierarchical clustering, as a more fine-grained version of the classical edge ranking problem, and, specifically when the…
In this paper geometry of Gromov-Hausdorff distance on the class of all metric spaces considered up to an isometry is investigated. For this class continuous curves and their lengths are defined, and it is shown that the Gromov-Hausdorff…
The Metric Embedding problem takes as input two metric spaces $(X,D_X)$ and $(Y,D_Y)$, and a positive integer $d$. The objective is to determine whether there is an embedding $F:X \rightarrow Y$ such that $d_{F} \leq d$, where $d_{F}$…
We present improved learning-augmented algorithms for finding an approximate minimum spanning tree (MST) for points in an arbitrary metric space. Our work follows a recent framework called metric forest completion (MFC), where the learned…