Related papers: FPT-algorithms for computing Gromov-Hausdorff and …
The Hausdorff distance is a relatively new measure of similarity of graphs. The notion of the Hausdorff distance considers a special kind of a common subgraph of the compared graphs and depends on the structural properties outside of the…
Recent studies propose enhancing machine learning models by aligning the geometric characteristics of the latent space with the underlying data structure. Instead of relying solely on Euclidean space, researchers have suggested using…
Merge trees are a common topological descriptor for data with a hierarchical component, such as terrains and scalar fields. The interleaving distance, in turn, is a common distance for comparing merge trees. However, the interleaving…
We present a new class of metrics for unrooted phylogenetic $X$-trees derived from the Gromov-Hausdorff distance for (compact) metric spaces. These metrics can be efficiently computed by linear or quadratic programming. They are robust…
The course was given at Peking University, Fall 2019. We discuss the following subjects: (1) Introduction to general topology, hyperspaces, metric and pseudometric spaces, graph theory. (2) Graphs in metric spaces, minimum spanning tree,…
In the present paper we investigate geometric characteristics of compact metric spaces, which can be described in terms of Gromov-Hausdorff distances to simplexes, i.e., to finite metric spaces such that all their nonzero distances are…
The Gromov-Hausdorff distance measures the similarity between two metric spaces by isometrically embedding them into an ambient metric space. We introduce an analogue of this distance for metric spaces endowed with directed structures. The…
We give algorithms to compute the Fr\'echet distance of trees and graphs with bounded tree width. Our algorithms run in $O(n^2)$ time for trees of bounded degree, and $O(n^2\sqrt{n \log n})$ time for trees of arbitrary degree. For graphs of…
Given a pointed metric space $(X,\mathsf{dist}, w)$ on $n$ points, its Gromov's approximating tree is a 0-hyperbolic pseudo-metric space $(X,\mathsf{dist}_T)$ such that $\mathsf{dist}(x,w)=\mathsf{dist}_T(x,w)$ and $\mathsf{dist}(x, y)-2…
The notion of $\mathcal{H}$-treewidth, where $\mathcal{H}$ is a hereditary graph class, was recently introduced as a generalization of the treewidth of an undirected graph. Roughly speaking, a graph of $\mathcal{H}$-treewidth at most $k$…
The Gromov-Hausdorff (GH) distance is traditionally used for measuring distances between metric spaces. It is defined as the minimal distortion of embedding one surface into the other, while the optimal correspondence can be described as…
Geodesic distance, sometimes called shortest path length, has proven useful in a great variety of applications, such as information retrieval on networks including treelike networked models. Here, our goal is to analytically determine the…
An elimination tree of a connected graph $G$ is a rooted tree on the vertices of $G$ obtained by choosing a root $v$ and recursing on the connected components of $G-v$ to obtain the subtrees of $v$. The graph associahedron of $G$ is a…
We propose an algorithm whose input are parameters $k$ and $r$ and a hypergraph $H$ of rank at most $r$. The algorithm either returns a tree decomposition of $H$ of generalized hypertree width at most $4k$ or 'NO'. In the latter case, it is…
The Gromov-Hausdorff distance $(d_{GH})$ proves to be a useful distance measure between shapes. In order to approximate $d_{GH}$ for compact subsets $X,Y\subset\mathbb{R}^d$, we look into its relationship with $d_{H,iso}$, the infimum…
We define, analyze, and give efficient algorithms for two kinds of distance measures for rooted and unrooted phylogenies. For rooted trees, our measures are based on the topologies the input trees induce on triplets; that is, on…
One of the central notions to emerge from the study of persistent homology is that of interleaving distance. It has found recent applications in symplectic and contact geometry, sheaf theory, computational geometry, and phylogenetics. Here…
The Gromov--Hausdorff distance measures the difference in shape between compact metric spaces. While even approximating the distance up to any practical factor poses an NP-hard problem, its relaxations have proven useful for the problems in…
For any fixed measure $H$ that maps graphs to real numbers, the MinH problem is defined as follows: given a graph $G$, an integer $k$, and a target $\tau$, is there a set $S$ of $k$ vertices that can be deleted, so that $H(G - S)$ is at…
Using the wedge sum of metric spaces, for all compact metrizable spaces, we construct a topological embedding of the compact metrizable space into the set of all metric trees in the Gromov--Hausdorff space with finite prescribed values. As…