Related papers: FPT-algorithms for computing Gromov-Hausdorff and …
In phylogenetics, distances are often used to measure the incongruence between a pair of phylogenetic trees that are reconstructed by different methods or using different regions of genome. Motivated by the maximum parsimony principle in…
Kondo et al. (DS 2014) proposed methods for computing distances between unordered rooted trees by transforming an instance of the distance computing problem into an instance of the integer programming problem. They showed that the tree edit…
For a graph class ${\cal H}$, the graph parameters elimination distance to ${\cal H}$ (denoted by ${\bf ed}_{\cal H}$) [Bulian and Dawar, Algorithmica, 2016], and ${\cal H}$-treewidth (denoted by ${\bf tw}_{\cal H}$) [Eiben et al. JCSS,…
We augment a tree $T$ with a shortcut $pq$ to minimize the largest distance between any two points along the resulting augmented tree $T+pq$. We study this problem in a continuous and geometric setting where $T$ is a geometric tree in the…
An important operation in geometry processing is finding the correspondences between pairs of shapes. The Gromov-Hausdorff distance, a measure of dissimilarity between metric spaces, has been found to be highly useful for nonrigid shape…
The Gromov--Wasserstein (GW) distance and its fused extension (FGW) are powerful tools for comparing heterogeneous data. Their computation is, however, challenging since both distances are based on non-convex, quadratic optimal transport…
Merge trees, a type of topological descriptor, serve to identify and summarize the topological characteristics associated with scalar fields. They present a great potential for the analysis and visualization of time-varying data. First,…
The graph edit distance is used for comparing graphs in various domains. Due to its high computational complexity it is primarily approximated. Widely-used heuristics search for an optimal assignment of vertices based on the distance…
The purpose of this paper is to extend the definition of Frechet distance which measures the distance between two curves to a distance (Frechet-Like distance) which measures the similarity between two rooted trees. The definition of…
The purpose of this paper is twofold. On a technical side, we propose an extension of the Hausdorff distance from metric spaces to spaces equipped with asymmetric distance measures. Specifically, we focus on the family of Bregman…
We develop the theoretical foundations of a generalized Gromov-Hausdorff distance between functions on networks that has recently been applied to various subfields of topological data analysis and optimal transport. These functional…
We consider the well-studied problem of finding a spanning tree with minimum average distance between vertex pairs (called a MAD tree). This is a classic network design problem which is known to be NP-hard. While approximation algorithms…
Current Graph Neural Networks (GNN) architectures generally rely on two important components: node features embedding through message passing, and aggregation with a specialized form of pooling. The structural (or topological) information…
The spanning tree heuristic is a commonly adopted procedure in network inference and estimation. It allows one to generalize an inference method developed for trees, which is usually based on a statistically rigorous approach, to a…
Structured data, such as graphs, is vital in machine learning due to its capacity to capture complex relationships and interactions. In recent years, the Fused Gromov-Wasserstein (FGW) distance has attracted growing interest because it…
This paper introduces the \emph{$d$-distance matching problem}, in which we are given a bipartite graph $G=(S,T;E)$ with $S=\{s_1,\dots,s_n\}$, a weight function on the edges and an integer $d\in\mathbb Z_+$. The goal is to find a maximum…
In this paper, an approach for generalizing the Gromov-Hausdorff metric is presented, which applies to metric spaces equipped with some additional structure. A special case is the Gromov-Hausdorff-Prokhorov metric between measured metric…
In the present paper a distinguishability of bounded metric spaces by the set of the Gromov--Hausdorff distances to so-called simplexes (metric spaces with unique non-zero distance) is investigated. It is easy to construct an example of…
A labeled metric space is intuitively speaking a metric space together with a special set of points to be understood as the geometric boundary of the space. We study basic properties of a recently introduced labeled Gromov-Hausdorff…
Gromov--Wasserstein (GW) distances compare graphs, shapes, and point clouds through internal distances, without requiring a common coordinate system. This invariance is powerful, but discrete GW is a nonconvex quadratic optimal transport…