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Flows over remarkably long distances are crucial to the functioning of many organisms, across all kingdoms of life. Coordinated flows are fundamental to power deformations, required for migration or development, or to spread resources and…

Biological Physics · Physics 2018-10-19 Jean-Daniel Julien , Karen Alim

Microtubules (MTs) are important cytoskeletal structures, engaged in a number of specific cellular activities, including vesicular traffic, cell cyto-architecture and motility, cell division, and information processing within neuronal…

Subcellular Processes · Quantitative Biology 2007-05-23 Avner Priel , Arnolt J. Ramos , Jack A. Tuszynski , Horacio F. Cantiello

Models of the mind are based on the possibility of computing in brain microtubules. From this point of view, information processing is the fundamental issue for understanding the brain mechanisms that produce consciousness. The cytoskeleton…

Subcellular Processes · Quantitative Biology 2007-05-23 Jean Faber , Renato Portugal , Luiz Pinguelli Rosa

Mendelian randomization implemented through instrumental variable analysis is frequently discussed in causality and recently the number of applications on real data is increasing. However, there are very few discussions to address modern…

Applications · Statistics 2020-04-16 Azam Yazdani

Flowing blood displays a phenomenon called margination, in which leukocytes and platelets are preferentially found near blood vessel walls, while erythrocytes are depleted from these regions. Here margination is investigated using direct…

Soft Condensed Matter · Physics 2012-09-05 Amit Kumar , Michael D. Graham

In this paper, we will provide an introduction to the brain structure and function. Brain is an astonishing living organ inside our heads, weighing about 1.5kg, consisting of billions of tiny cells. The brain enables us to sense the world…

Neurons and Cognition · Quantitative Biology 2019-06-11 Jiawei Zhang

The brain is immensely complex, with diverse components and dynamic interactions building upon one another to orchestrate a wide range of functions and behaviors. Understanding patterns of these complex interactions and how they are…

Neurons and Cognition · Quantitative Biology 2024-08-06 Suman Kulkarni , Dani S. Bassett

The hippocampus and the striatum support episodic and procedural memory, respectively, and "place" and "response" learning within spatial navigation. Recently this dichotomy has been linked to "model-based" and "model-free" reinforcement…

Neurons and Cognition · Quantitative Biology 2018-02-05 Chersi Fabian , Burgess Neil

Lateral organization in the plane of the plasma membrane is an important driver of biological processes. The past dozen years have seen increasing experimental support for the notion that lipid organization plays an important role in…

Biological Physics · Physics 2020-09-03 Thomas R. Shaw , Subhadip Ghosh , Sarah L. Veatch

Parcellation of human cerebellar pathways is essential for advancing our understanding of the human brain. Existing diffusion MRI tractography parcellation methods have been successful in defining major cerebellar fibre tracts, while…

This review article deals with the specificities of the proteomics analysis of membrane proteins.

Genomics · Quantitative Biology 2008-07-08 Thierry Rabilloud

This chapter sheds light on the synaptic organization of the brain from the perspective of computational neuroscience. It provides an introductory overview on how to account for empirical data in mathematical models, implement such models…

Intracellular transport processes are essential to the healthy development of many organisms as well as more generally to healthy cellular function. The complex dynamics and interactions between protein molecules and filaments on different…

Dynamical Systems · Mathematics 2022-07-27 Maria-Veronica Ciocanel

The actin cytoskeleton of cells is in continuous motion due to both polymerization of new filaments and their contraction by myosin II molecular motors. Through adhesion to the substrate, such intracellular flow can be converted into cell…

Subcellular Processes · Quantitative Biology 2021-08-11 Oliver M. Drozdowski , Falko Ziebert , Ulrich S. Schwarz

Microcirculation of blood and oxygen transport play important roles in biological function of optic nerve and are directly affected by damages or pathologies. This work develops a multi-domain model for optic nerve, that includes important…

Biological Physics · Physics 2024-01-18 Zilong Song , Shixin Xu , Robert Eisenberg , Huaxiong Huang

A salient feature of prefrontal cortex organization is the vast diversity of cell types that support the temporal integration of events required for sculpting future responses. A major obstacle in understanding the routing of information…

Neurons and Cognition · Quantitative Biology 2012-04-04 Michael V. Baratta , Shinya Nakamura , Peter Dobelis , Matthew B. Pomrenze , Samuel D. Dolzani , Donald C. Cooper

A new model is proposed to explain coiling of myelins composed of fluid bilayers. This model allows the constituent bilayer cylinders of a myelin to be non-coaxial and the bilayer lateral tension to vary from bilayer to bilayer. The…

Soft Condensed Matter · Physics 2009-11-11 Jung-Ren Huang

Recent advances in fluorescence microscopy techniques and tissue clearing, labeling, and staining provide unprecedented opportunities to investigate brain structure and function. These experiments' images make it possible to catalog brain…

Active phenomena which involve force generation and motion play a key role in a number of phenomena in living cells such as cell motility, muscle contraction and the active transport of material and organelles. Here we discuss mechanical…

Biological Physics · Physics 2007-05-23 Frank Julicher

Since the earliest electroencephalography experiments, large scale oscillations have been observed in the mammalian brain. More recently, episodes of oscillation and bursting have been identified not only in the cerebral cortex and…

Neurons and Cognition · Quantitative Biology 2025-09-03 Daniel Pouzzner