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The effect of signal integration through cis-regulatory modules (CRMs) on synchronization and clustering of populations of two-component genetic oscillators coupled by quorum sensing is in detail investigated. We find that the CRMs play an…

Molecular Networks · Quantitative Biology 2009-04-06 Jiajun Zhang , Zhanjiang Yuan , Tianshou Zhou

Synchronization of self-sustained oscillators under fixed-frequency and amplitude forcing is well understood, but how time-varying forcing mangles phase locking has been much less explored. Theory predicts that slow, deterministic…

Chaotic Dynamics · Physics 2026-01-07 Zhenwei Xu , Ulrich Kuhl , Nicolas Noiray

Gene transcription is a highly stochastic and dynamic process. As a result, the mRNA copy number of a given gene is heterogeneous both between cells and across time. We present a framework to model gene transcription in populations of cells…

Quantitative Methods · Quantitative Biology 2017-01-10 Justine Dattani , Mauricio Barahona

Gene expression is a fundamental process in a living system. The small RNAs (sRNAs) is widely observed as a global regulator in gene expression. The inherent nonlinearity in this regulatory process together with the bursty production of…

Molecular Networks · Quantitative Biology 2021-10-12 Shigang Qiu , Tao Jia

Recent research has provided a wealth of evidence highlighting the pivotal role of high-order interdependencies in supporting the information-processing capabilities of distributed complex systems. These findings may suggest that high-order…

Adaptation and Self-Organizing Systems · Physics 2023-05-24 Patricio Orio , Pedro A. M. Mediano , Fernando E. Rosas

We propose a methodology to analyze synchronization in an ensemble of diffusively coupled multistable systems. First, we study how two bidirectionally coupled multistable oscillators synchronize and demonstrate the high complexity of the…

Chaotic Dynamics · Physics 2015-06-23 R. Sevilla-Escoboza , J. M. Buldú , A. N. Pisarchik , S. Boccaletti , R. Gutiérrez

While the stochastic dynamics of two coupled oscillators have been extensively studied, most of the research has focused on stochastic input with equal intensity. However, this is often not the case in biological systems. In this study, we…

Dynamical Systems · Mathematics 2023-03-02 Gurpreet Jagdev , Na Yu

Abrupt changes of behaviour in complex networks can be triggered by a single node. This work describes the dynamical fundamentals of how the behaviour of one node affects the whole network formed by coupled phase-oscillators with…

Adaptation and Self-Organizing Systems · Physics 2015-12-14 Chengwei Wang , Celso Grebogi , Murilo S. Baptista

Synchronization of networked oscillators is known to depend fundamentally on the interplay between the dynamics of the graph's units and the microscopic arrangement of the network's structure. For non identical elements, the lack of…

Adaptation and Self-Organizing Systems · Physics 2016-01-20 A. Navas , J. A. Villacorta-Atienza , I. Leyva , J. A. Almendral , I. Sendiña-Nadal , S. Boccaletti

We investigate stochastic resonance (SR) in an ensemble of coupled overdamped bistable oscillators driven by colored noise. The networks incorporate the weighted contributions of both pairwise coupling and 2-simplex coupling. Our findings…

Statistical Mechanics · Physics 2026-03-09 Zhongwen Bi , Dan Zhao , Qi Liu , Jürgen Kurths , Yong Xu

Delays and stochasticity have both served as crucially valuable ingredients in mathematical descriptions of control, physical, and biological systems. In this work, we investigate how explicitly dynamical stochasticity in delays modulates…

Molecular Networks · Quantitative Biology 2023-07-10 Bhargav R. Karamched , Christopher E. Miles

Networks of fast-spiking interneurons are crucial for the generation of neural oscillations in the brain. Here we study the synchronous behavior of interneuronal networks that are coupled by delayed inhibitory and fast electrical synapses.…

Neurons and Cognition · Quantitative Biology 2012-06-22 Daqing Guo , Qingyun Wang , Matjaz Perc

The functional significance of correlations between action potentials of neurons is still a matter of vivid debates. In particular it is presently unclear how much synchrony is caused by afferent synchronized events and how much is…

Neurons and Cognition · Quantitative Biology 2013-04-09 Matthias Schultze-Kraft , Markus Diesmann , Sonja Grün , Moritz Helias

Even the most regular stick-slip frictional sliding is always stochastic, with irregularity in both the intervals between slip events and the sizes of the associated stress drops. Applying small-amplitude oscillations to the shear force, we…

Soft Condensed Matter · Physics 2015-05-27 Rosario Capozza , Shmuel M. Rubinstein , Itay Barel , Michael Urbakh , Jay Fineberg

We study explosive synchronization, a phenomenon characterized by first-order phase transitions between incoherent and synchronized states in networks of coupled oscillators. While explosive synchronization has been the subject of many…

Adaptation and Self-Organizing Systems · Physics 2014-08-22 Per Sebastian Skardal , Alex Arenas

The control of complex systems and network-coupled dynamical systems is a topic of vital theoretical importance in mathematics and physics with a wide range of applications in engineering and various other sciences. Motivated by recent…

Adaptation and Self-Organizing Systems · Physics 2015-08-24 Per Sebastian Skardal , Alex Arenas

The stability (or instability) of synchronization is important in a number of real world systems, including the power grid, the human brain and biological cells. For identical synchronization, the synchronizability of a network, which can…

Chaotic Dynamics · Physics 2018-04-17 Jeremie Fish , Jie Sun

We propose a method for controlling synchronization patterns of limit-cycle oscillators by common noisy inputs, i.e., by utilizing noise-induced synchronization. Various synchronization patterns, including fully synchronized and clustered…

Adaptation and Self-Organizing Systems · Physics 2015-02-18 Wataru Kurebayashi , Tsubasa Ishii , Mikio Hasegawa , Hiroya Nakao

We study synchronization and noise-induced resonance phenomena in systems of globally coupled oscillators, each possessing finite inertia. The behavior of the order parameter, which measures collective synchronization of the system, is…

Statistical Mechanics · Physics 2009-10-31 H. Hong , M. Y. Choi

Ordered and disordered behavior in large ensembles of coupled oscillators map to different functional states in a wide range of applications, e.g., active and resting states in the brain and stable and unstable power grid configurations.…

Adaptation and Self-Organizing Systems · Physics 2022-11-02 Can Xu , Xuan Wang , Per Sebastian Skardal