English
Related papers

Related papers: Stochastic synchronization of genetic oscillators …

200 papers

The effect of stirring in an inhomogeneous oscillatory medium is investigated. We show that the stirring rate can control the macroscopic behavior of the system producing collective oscillations (synchronization) or complete quenching of…

Chaotic Dynamics · Physics 2009-11-10 Zoltan Neufeld , Istvan Z. Kiss , Changsong Zhou , Juergen Kurths

We study the efficiency of synchronization in ensembles of identical coupled stochastic oscillator systems. By deriving a chemical Langevin equation, we measure the rate at which the systems synchronize. The rate at which the difference in…

Subcellular Processes · Quantitative Biology 2015-04-03 G. Reenaroy Devi , R. K. Brojen Singh , Ram Ramaswamy

A formalism is developed which describes the extent to which stochastic oscillations in biochemical models are synchronised. It is based on the calculation of the complex coherence function within the linear noise approximation. The method…

Statistical Mechanics · Physics 2013-07-29 Joseph D. Challenger , Alan J. McKane

Biochemical reaction networks are subjected to large fluctuations attributable to small molecule numbers, yet underlie reliable biological functions. Most theoretical approaches describe them as purely deterministic or stochastic dynamical…

Molecular Networks · Quantitative Biology 2013-06-11 Jingkui Wang , Marc Lefranc , Quentin Thommen

We show that noise-induced oscillations in a gene circuit model display stochastic coherence, that is, a maximum in the regularity of the oscillations as a function of noise amplitude. The effect is manifest as a system-size effect in a…

Molecular Networks · Quantitative Biology 2009-08-05 Robert C. Hilborn , Jessie D. Erwin

Dissipative coupling is known to induce synchronization. Conversely it may be hypothesized that oscillators driven to synchronize may reduce power dissipation in their coupling. The latter scenario is realized in the human cardiorespiratory…

Biological Physics · Physics 2026-03-25 Joshua R. Border , Alain Nogaret , Andrew Lefevre , Vishal Jain

Synchronization of coupled oscillators is a fundamental process in both natural and artificial networks. While much work has investigated the asymptotic stability of the synchronous solution, the fundamental question of the transient…

Adaptation and Self-Organizing Systems · Physics 2024-10-22 Amirhossein Nazerian , Joseph D Hart , Matteo Lodi , Francesco Sorrentino

We study, both analytically and numerically, the dynamics of mechanical oscillators kept in motion by a feedback force, which is generated electronically from a signal produced by the oscillators themselves. This kind of self-sustained…

Adaptation and Self-Organizing Systems · Physics 2015-06-15 Sebastian I. Arroyo , Damian H. Zanette

Timing is essential for many cellular processes, from cellular responses to external stimuli to the cell cycle and circadian clocks. Many of these processes are based on gene expression. For example, an activated gene may be required to…

Molecular Networks · Quantitative Biology 2017-02-24 Alma Dal Co , Marco Cosentino Lagomarsino , Michele Caselle , Matteo Osella

In this manuscript, a silent resonator neuron is coupled with a spiking integrator neuron through the gap junction, when the coupled neurons are of different types of excitability and none of the coupled neurons exhibit mixed mode…

Dynamical Systems · Mathematics 2024-01-18 Mohammad Reza Razvan , Somaye Yasaman

We investigate the synchronization dynamics of two coupled noise-driven FitzHugh-Nagumo systems, representing two neural populations. For certain choices of the noise intensities and coupling strength, we find cooperative stochastic…

Adaptation and Self-Organizing Systems · Physics 2025-07-29 Philipp Hövel , Sarang A. Shah , Markus A. Dahlem , Eckehard Schöll

We study optimal synchronization in networks of heterogeneous phase oscillators. Our main result is the derivation of a synchrony alignment function that encodes the interplay between network structure and oscillators' frequencies and can…

Adaptation and Self-Organizing Systems · Physics 2014-10-21 Per Sebastian Skardal , Dane Taylor , Jie Sun

We have investigated cooperative dynamics of an artificial stochastic resonant system, which is a recurrent ring connection of neuron-like signal transducers (NST) based on stochastic resonance (SR), using electronic circuit experiments.…

Disordered Systems and Neural Networks · Physics 2015-05-13 Yasushi Hotta , Teruo Kanki , Naoki Asakawa , Hitoshi Tabata , Tomoji Kawai

We study synchronization in populations of phase-coupled stochastic three-state oscillators characterized by a distribution of transition rates. We present results on an exactly solvable dimer as well as a systematic characterization of…

Statistical Mechanics · Physics 2015-06-25 Kevin Wood , C. Van den Broeck , R. Kawai , Katja Lindenberg

We make a short review about the synchronization in coupled phase oscillator models. Next, we study the common-noise-induced synchronization among active rotators. At an intermediate noise strength, the noise-induced synchronization takes…

Adaptation and Self-Organizing Systems · Physics 2015-05-13 Hidetsugu Sakaguchi

Synchronization is a widespread phenomenon observed in physical, biological, and social networks, which persists even under the influence of strong noise. Previous research on oscillators subject to common noise has shown that noise can…

Adaptation and Self-Organizing Systems · Physics 2021-06-02 Zachary G. Nicolaou , Michael Sebek , Istvan Z. Kiss , Adilson E. Motter

Intrinsic transcriptional noise induced by operator fluctuations is investigated with a simple spin like stochastic model. The effects of transcriptional fluctuations in protein synthesis is probed by coupling transcription and translation…

Other Quantitative Biology · Quantitative Biology 2007-05-23 Guilherme da C. P. Innocentini , Jose E. M. Hornos

We study the dynamics of phase synchronization in growing populations of discrete phase oscillatory systems when the division process is coupled to the distribution of oscillator phases. Using mean field theory, linear stability analysis,…

Statistical Mechanics · Physics 2015-06-16 Wen Yu , Kevin B. Wood

From the flashes of fireflies to Josephson junctions and power infrastructure, networks of coupled phase oscillators provide a powerful framework to describe synchronization phenomena in many natural and engineered systems. Most real-world…

Adaptation and Self-Organizing Systems · Physics 2022-03-02 Sherwood Martineau , Tim Saffold , Timothy T. Chang , Henrik Ronellenfitsch

We show that for two identical neuronal oscillators with strictly positive phase resetting curve, isochronous synchrony is an unstable attractor and arbitrarily weak noise can destroy entrainment and generate intermittent phase slips. Small…

Neurons and Cognition · Quantitative Biology 2016-11-18 Ehsan Bolhasani , Alireza Valizadeh