Related papers: A sign-reversing involution to count labeled lone-…
A caterpillar tree is a connected, acyclic, graph in which all vertices are either a member of a central path, or joined to that central path by a single edge. In other words, caterpillar trees are the class of trees which become path…
An odd coloring of a graph is a proper coloring such that every non-isolated vertex has a color that appears at an odd number of its neighbors. This notion was introduced by Petr\v{s}evski and \v{S}krekovski in 2022. In this paper, we focus…
Recent work has proven the existence of extreme inbreeding in a European ancestry sample taken from the contemporary UK population \cite{nature_01}. This result brings our attention again to a math problem related to inbreeding family trees…
The Graceful Tree Conjecture of Rosa from 1967 asserts that the vertices of each tree T of order n can be injectively labelled by using the numbers {1,2,...,n} in such a way that the absolute differences induced on the edges are pairwise…
An evolutionary tree is a rooted tree where each internal vertex has at least two children and where the leaves are labeled with distinct symbols representing species. Evolutionary trees are useful for modeling the evolutionary history of…
Combinatorial classes T that are recursively defined using combinations of the standard multiset, sequence, directed cycle and cycle constructions, and their restrictions, have generating series T(z) with a positive radius of convergence;…
We consider phylogeny estimation under a two-state model of sequence evolution by site substitution on a tree. In the asymptotic regime where the sequence lengths tend to infinity, we show that for any fixed $k$ no statistically consistent…
The log-det distance between two aligned DNA sequences was introduced as a tool for statistically consistent inference of a gene tree under simple non-mixture models of sequence evolution. Here we prove that the log-det distance, coupled…
Galled trees are studied as a recombination model in population genetics. This class of phylogenetic networks is generalized into tree-child, galled and reticulation-visible network classes by relaxing a structural condition imposed on…
Background: Tree reconciliation problems have long been studied in phylogenetics. A particular variant of the reconciliation problem for a gene tree T and a species tree S assumes that for each interior vertex x of T it is known whether x…
A pedigree is a directed graph in which each vertex (except the founder vertices) has two parents. The main result in this paper is a construction of an infinite family of counter examples to a reconstruction problem on pedigrees, thus…
We evaluate the hyperpfaffian of a skew-symmetric $k$-ary polynomial $f$ of degree $k/2 \cdot (n-1)$. The result is a product of the Vandermonde product and a certain expression involving the coefficients of the polynomial $f$. The proof…
We generalize Schwenk's result that almost all trees contain any given limb to trees with positive integer vertex weights. The concept of characteristic polynomial is extended to such weighted trees and we prove that the proportion of…
We prove a new formula for the generating function of multitype Cayley trees counted according to their degree distribution. Using this formula we recover and extend several enumerative results about trees. In particular, we extend some…
Species trees represent the historical divergences of populations or species, while gene trees trace the ancestry of individual gene copies sampled within those populations. In cases involving rapid speciation, gene trees with topologies…
A graph is called set-sequential if its vertices can be labeled with distinct nonzero vectors in $\mathbb{F}_2^n$ such that when each edge is labeled with the sum$\pmod{2}$ of its vertices, every nonzero vector in $\mathbb{F}_2^n$ is the…
Pedigrees, or family trees, are graphs of family relationships that are used to study inheritance. A fundamental problem in computational biology is to find, for a pedigree with $n$ individuals genotyped at every site, a set of…
Egecioglu and Remmel gave an interpretation for the entries of the inverse Kostka matrix K^{-1} in terms of special rim-hook tableaux. They were able to use this interpretation to give a combinatorial proof that KK^{-1}=I but were unable to…
We define an all-$k$-isolating set of a graph to be a set $S$ of vertices such that, if one removes $S$ and all its neighbors, then no component in what remains has order $k$ or more. The case $k=1$ corresponds to a dominating set and the…
A vertex of degree one is called an end-vertex, and an end-vertex of a tree is called a leaf. A tree with at most $k$ leaves is called a $k$-ended tree. For a positive integer $k$, let $t_k$ be the order of a largest $k$-ended tree. Let…