Related papers: A sign-reversing involution to count labeled lone-…
This paper contains a classification of countable lower 1-transitive linear orders. The notion of lower 1-transitivity generalises that of 1-transitivity for linear orders, and is essential for the structure theory of 1-transitive trees.…
In this paper, we use a new and correct method to determine the $n$-vertex $k$-trees with the first three largest signless Laplacian indices.
The genealogy at a single locus of a constant size $N$ population in equilibrium is given by the well-known Kingman's coalescent. When considering multiple loci under recombination, the ancestral recombination graph encodes the genealogies…
The standard approach to estimate species trees is to align a selected set of genes, concatenate the alignments and then estimate a consensus tree. However, individual genes contain differing levels of evolutionary information, either…
In a recent paper, the question of determining the fraction of binary trees that contain a fixed pattern known as the snowflake was posed. We show that this fraction goes to 1, providing two very different proofs: a purely combinatorial one…
We prove bijectively that the total number of cycles of all even permutations of $[n]=\{1,2,...,n\}$ and the total number of cycles of all odd permutations of $[n]$ differ by $(-1)^n(n-2)!$, which was stated as an open problem by Mikl\'{o}s…
The $(n-\ell)$-deck of an $n$-vertex graph is the multiset of (unlabeled) subgraphs obtained from it by deleting $\ell$ vertices. An $n$-vertex graph is $\ell$-reconstructible if it is determined by its $(n-\ell)$-deck, meaning that no…
We show that an algorithmic construction of sequences of recursive trees leads to a direct proof of the convergence of random recursive trees in an associated Doob-Martin compactification; it also gives a representation of the limit in…
A tree T is invertible if and only if T has a perfect matching. Godsil considers an invertible tree T and finds that the inverse of the adjacency matrix of T has entries in {0, 1, -1} and is the signed adjacency matrix of a graph which…
We study decreasing binary trees in which every vertex with two children is colored red or blue. We construct two bijections. The first, to ordered set partitions into odd-sized blocks each arranged as an alternating permutation, shows that…
The problem of counting plane trees with $n$ edges and an even or an odd number of leaves was studied by Eu, Liu and Yeh, in connection with an identity on coloring nets due to Stanley. This identity was also obtained by Bonin, Shapiro and…
The Ward numbers $W(n,k)$ combinatorially enumerate set partitions with block sizes $\geq 2$ and phylogenetic trees (total partition trees). We prove that $W(n,k)$ also counts \emph{increasing Schr\"oder trees} by verifying they satisfy…
In 1998, B\"{o}cker and Dress gave a 1-to-1 correspondence between symbolically dated rooted trees and symbolic ultrametrics. We consider the corresponding problem for unrooted trees. More precisely, given a tree $T$ with leaf set $X$ and a…
Let T_k^m={\sigma \in S_k | \sigma_1=m}. We prove that the number of permutations which avoid all patterns in T_k^m equals (k-2)!(k-1)^{n+1-k} for k <= n. We then prove that for any \tau in T_k^1 (or any \tau in T_k^k), the number of…
We develop algorithms, implemented in Maple, that study the number of vertices with a particular number of children in a random ordered tree where all vertices must have a number of children in some finite set. By calculating the mixed…
As part of work to connect phylogenetics with machine learning, there has been considerable recent interest in vector encodings of phylogenetic trees. We present a simple new "ordered leaf attachment" (OLA) method for uniquely encoding a…
We show that the growth of a unimodular random rooted tree $(T,o)$ of degree bounded by $d$ always exists, assuming its upper growth passes the critical threshold $\sqrt{d-1}$. This complements Timar's work who showed the possible…
Using the Lagrange inversion formula, $t$-ary trees are enumerated with respect to edge type (left, middle, right for ternary trees).
We establish combinatorial interpretations of several identities for the Catalan and Fine numbers and, along the way, we present some new bijections of independent interest. Briefly, we show that C_{n} = 1/(n+1) Sum_{k} (n+1)choose(2k+1)…
We consider the reconciliation problem, in which the task is to find a mapping of a gene tree into a species tree, so as to maximize the likelihood of such fitting, given the available data. We describe a model for the evolution of the…