Related papers: A sign-reversing involution to count labeled lone-…
We give a short proof of the fact that the number of labelled trees on $n$ vertices is $n^{n-2}$. Although many short proofs are known, we have not seen this one before.
Orchard and tree-child networks share an important property with phylogenetic trees: they can be completely reduced to a single node by iteratively deleting cherries and reticulated cherries. As it is the case with phylogenetic trees, the…
In this paper we consider two aspects of the inverse problem of how to construct merge trees realizing a given barcode. Much of our investigation exploits a recently discovered connection between the symmetric group and barcodes in general…
Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…
By extending the breadth first search algorithm to any d-type critical or subcritical irreducible branching forest, we show that such forests may be encoded through d independent, integer valued, d-dimensional random walks. An application…
In this paper we enumerate and give bijections for the following four sets of vertices among rooted ordered trees of a fixed size: (i) first-children of degree $k$ at level $\ell$, (ii) non-first-children of degree $k$ at level $\ell-1$,…
We show that there is a bijection between real-linear automorphisms of the multicomplex numbers of order $n$ and signed permutations of length $2^{n-1}$. This allows us to deduce a number of results on the multicomplex numbers, including a…
We study the enumeration of spinal tree-child phylogenetic networks, a rigid family of tree-child networks in which all internal vertices lie on a single root--to--leaf path. We provide two complementary combinatorial frameworks. First, we…
Given a gene tree and a species tree, ancestral configurations represent the combinatorially distinct sets of gene lineages that can reach a given node of the species tree. They have been introduced as a data structure for use in the…
A classical conjecture of Erd\H{o}s and S\'os asks to determine the Tur\'an number of a tree. We consider variants of this problem in the settings of hypergraphs and multi-hypergraphs. In particular, for all $k$ and $r$, with $r \ge k…
Most of major algorithms for phylogenetic tree reconstruction assume that sequences in the analyzed set either do not have any offspring, or that parent sequences can maximally mutate into just two descendants. The graph resulting from such…
This paper studies increasing trees on $n$ labeled vertices, in which labels increase from the root to the leaves. It is known that the number of binary increasing trees coincides with the number of alternating permutations (Euler numbers).…
We study the minimum size $f$ of a feedback vertex set in directed and undirected $n$-vertex graphs of given degeneracy or treewidth. In the undirected setting the bound $\frac{k-1}{k+1}n$ is known to be tight for graphs with bounded…
Billey et al. [arXiv:1507.04976] have recently discovered a surprisingly simple formula for the number $a_n(\sigma)$ of leaf-labelled rooted non-embedded binary trees (also known as phylogenetic trees) with $n\geq 1$ leaves, fixed (for the…
This work concerns a construction of pattern-avoiding inversion sequences from right to left we call the generating tree growing on the left. We first apply this construction to inversion sequences avoiding 201 and 210, resulting in a new…
The ongoing explosion of genome sequence data is transforming how we reconstruct and understand the histories of biological systems. Across biological scales, from individual cells to populations and species, trees-based models provide a…
The concept of antimagic labelings of a graph is to produce distinct vertex sums by labeling edges through consecutive numbers starting from one. A long-standing conjecture is that every connected graph, except a single edge, is antimagic.…
We present a nice result on the probability of a cycle occurring in a randomly generated graph. We then provide some extensions and applications, including the proof of the famous Cayley formula, which states that the number of labeled…
Lajos Takacs gave a somewhat formidable alternating sum formula for the number of forests of unrooted trees on $n$ labeled vertices. Here we use a weight-reversing involution on suitable tree configurations to give a combinatorial…
The use of machine learning algorithms in finance, medicine, and criminal justice can deeply impact human lives. As a consequence, research into interpretable machine learning has rapidly grown in an attempt to better control and fix…