Related papers: Phylogenetic invariants for group-based models

We prove a boundedness-theorem for families of abelian varieties with real multiplication. More generally, we study curves in Hilbert modular varieties from the point of view of the Green Griffiths-Lang conjecture claiming that entire…

We consider a generalization of representations of quivers that can be derived from the ordinary representations of quivers by considering a product of arbitrary classical groups instead of a product of the general linear groups and by…

We classify indecomposable commutative separable (special Frobenius) algebras and their local modules in (untwisted) group-theoretical modular categories. This gives a description of modular invariants for group-theoretical modular data. As…

We investigate projective varieties which are geometric models of binary symmetric phylogenetic 3-valent trees. We prove that these varieties have Gorenstein terminal singularities (with small resolution) and they are Fano varieties of…

A model of genomic sequence evolution on a species tree should include not only a sequence substitution process, but also a coalescent process, since different sites may evolve on different gene trees due to incomplete lineage sorting.…

In this paper we generalize the $j$-invariant criterion for the semistable reduction type of an elliptic curve to superelliptic curves $X$ given by $y^{n}=f(x)$. We first define a set of tropical invariants for $f(x)$ using symmetrized…

A major unsolved problem (according to Demailly 1997) towards the Kobayashi hyperbolicity conjecture in optimal degree is to understand jet differentials of germs of holomorphic discs that are invariant under any reparametrization of the…

In algebraic statistics, the Kimura 3-parameter model is one of the most interesting and classical phylogenetic models. We prove that the ideals associated to this model are generated in degree four, confirming a conjecture by Sturmfels and…

In this series of papers, we propose a theory of enumerative invariants counting self-dual objects in self-dual categories. Ordinary enumerative invariants in abelian categories can be seen as invariants for the structure group $\mathrm{GL}…

By generalizing Frobenius' polynomial method to good partition algebra, we will develop new character theories for a finite group $G$. A uniform defining equations are derived for these kinds of character theories. The new character…

Let k be a perfect field and A a finite dimensional k-algebra of finite global dimension (e.g. the path algebra of a finite quiver without oriented cycles). Making use of the recent theory of noncommutative motives, we prove that the value…

Given a simple vertex algebra A and a reductive group G of automorphisms of A, the invariant subalgebra A^G is strongly finitely generated in most examples where its structure is known. This phenomenon is subtle, and is generally not true…

We show that the Kuperberg invariant of the Weeks manifold with any framing is a gauge invariant of finite-dimensional Hopf algebras, which provides the first example of gauge invariants of general finite-dimensional Hopf algebras via…

Nakayama showed that deformation invariance of plurigenera for smooth complex varieties follows from the MMP and Abundance Conjectures. We generalize his result to families of singular pairs over DVRs of positive or mixed characteristic. As…

In this paper we study group-based Markov models of evolution and their mixtures. In the algebreo-geometric setting, group-based phylogenetic tree models correspond to toric varieties, while their mixtures correspond to secant and join…

We construct a birational invariant for certain algebraic group actions. We use this invariant to classify linear representations of finite abelian groups up to birational equivalence, thus answering, in a special case, a question of E. B.…

A genus one curve of degree 5 is defined by the 4 x 4 Pfaffians of a 5 x 5 alternating matrix of linear forms on P^4. We describe a general method for investigating the invariant theory of such models. We use it to explain how we found our…

In order to better understand the structure of classical rings of invariants for binary forms, Dixmier proposed, as a conjectural homogeneous system of parameters, an explicit collection of invariants previously studied by Hilbert. We…

Bayesian phylogenetics is vital for understanding evolutionary dynamics, and requires accurate and efficient approximation of posterior distributions over trees. In this work, we develop a variational Bayesian approach for ultrametric…

V.F. Molchanov considered the Hilbert series for the space of invariant skew-symmetric tensors and dual tensors with polynomial coefficients under the action of a real reflection group, and speculated that it had a certain product formula…