English

On word-representability of simplified de Bruijn graphs

Combinatorics 2023-07-13 v2

Abstract

A graph G=(V,E)G=(V,E) is word-representable if there exists a word ww over the alphabet VV such that letters xx and yy alternate in ww if and only if xyExy\in E. Word-representable graphs generalize several important classes of graphs such as 33-colorable graphs, circle graphs, and comparability graphs. There is a long line of research in the literature dedicated to word-representable graphs. In this paper, we study word-representability of simplified de Bruijn graphs. The simplified de Bruijn graph S(n,k)S(n,k) is a simple graph obtained from the de Bruijn graph B(n,k)B(n,k) by removing orientations and loops and replacing multiple edges between a pair of vertices by a single edge. De Bruijn graphs are a key object in combinatorics on words that found numerous applications, in particular, in genome assembly. We show that binary simplified de Bruijn graphs (i.e.\ S(n,2)S(n,2)) are word-representable for any n1n\geq 1, while S(2,k)S(2,k) and S(3,k)S(3,k) are non-word-representable for k3k\geq 3. We conjecture that all simplified de Bruijn graphs S(n,k)S(n,k) are non-word-rerpesentable for n4n\geq 4 and k3k\geq 3.

Keywords

Cite

@article{arxiv.2210.14762,
  title  = {On word-representability of simplified de Bruijn graphs},
  author = {Anthony V. Petyuk},
  journal= {arXiv preprint arXiv:2210.14762},
  year   = {2023}
}

Comments

24 pages, 2 figures. arXiv admin note: text overlap with arXiv:2110.05405 by other authors