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Signal transduction within biological cells is governed by networks of interacting proteins. Communication between these proteins is mediated by signaling molecules which bind to receptors and induce stochastic transitions between different…

分子网络 · 定量生物学 2017-04-05 Gonzalo Hernandez-Hernandez , Jesse Myers , Enric Alvarez-Lacalle , Yohannes Shiferaw

Bistability is considered wide-spread among bacteria and eukaryotic cells, useful e.g. for enzyme induction, bet hedging, and epigenetic switching. However, this phenomenon has mostly been described with deterministic dynamic or well-mixed…

亚细胞过程 · 定量生物学 2017-02-08 Robert G. Endres

Cellular decision-making (CDM) is a dynamic phenomenon often controlled by regulatory networks defining interactions between genes and transcription factor proteins. Traditional studies have focussed on molecular switches such as positive…

分子网络 · 定量生物学 2024-04-09 Akriti Srivastava , Mubasher Rashid

Cells in multicellular organisms adhere to the extracellular matrix through two-dimensional clusters spanning a size range from very few to thousands of adhesion bonds. For many common receptor-ligand systems, the ligands are tethered to a…

软凝聚态物质 · 物理学 2007-07-16 T. Erdmann , U. S. Schwarz

miRNAs serve as crucial post-transcriptional regulators in various essential cell fate decision. However, the contribution of the mRNA-miRNA mutual regulation to bistability is not fully understood. Here, we built a set of mathematical…

分子网络 · 定量生物学 2016-09-05 Xiao-Jun Tian , Hang Zhang , Jingyu Zhang , Jianhua Xing

Apoptosis is a highly regulated cell death mechanism involved in many physiological processes. A key component of extrinsically activated apoptosis is the death receptor Fas, which, on binding to its cognate ligand FasL, oligomerize to form…

细胞行为 · 定量生物学 2014-04-10 Kenneth L. Ho , Heather A. Harrington

The study of the interactions of living adherent cells with mechanically stable (visco)elastic materials enables understanding and exploiting physiological phenomena mediated by cell-extracellular communication. However, insight on the…

We solve the stochastic equations for a cluster of parallel bonds with shared constant loading, rebinding and the completely dissociated state as an absorbing boundary. In the small force regime, cluster lifetime grows only logarithmically…

软凝聚态物质 · 物理学 2007-05-23 T. Erdmann , U. S. Schwarz

We consider a theoretical model for membranes with adhesive receptors, or stickers, that are actively switched between two conformational states. In their 'on'-state, the stickers bind to ligands in an apposing membrane, whereas they do not…

软凝聚态物质 · 物理学 2007-05-23 Bartosz Rozycki , Reinhard Lipowsky , Thomas R. Weikl

The adhesion of biological membranes is controlled by various types of receptor and ligand molecules. In this letter, we present a statistical-mechanical model for membranes that interact via receptor/ligand bonds of two different lengths.…

软凝聚态物质 · 物理学 2009-11-11 Mesfin Asfaw , Bartosz Rozycki , Reinhard Lipowsky , Thomas R. Weikl

The optimal shapes attained by contractile cells on adhesive substrates are determined by the interplay between intracellular forces and adhesion with the extracellular matrix. We model the cell as a contractile film bounded by an elastic…

生物物理 · 物理学 2013-05-10 Shiladitya Banerjee , Luca Giomi

The motility of eukaryotic cells is strongly influenced by their environment, with confined cells often developing qualitatively different motility patterns from those migrating on simple two-dimensional substrates. Recent experiments,…

细胞行为 · 定量生物学 2024-12-24 Pedrom Zadeh , Brian A. Camley

Mechanical cues like the rigidity of the substrate are main determinants for the decision making of adherent cells. Here we use a mechano-chemical model to predict the cellular response to varying substrate stiffness. The model equations…

细胞行为 · 定量生物学 2010-07-08 A. Besser , U. S. Schwarz

Cell membranes interact via anchored receptor and ligand molecules. Central questions on cell adhesion concern the binding affinity of these membrane-anchored molecules, the mechanisms leading to the receptor-ligand domains observed during…

软凝聚态物质 · 物理学 2009-06-10 Thomas R. Weikl , Mesfin Asfaw , Heinrich Krobath , Bartosz Rozycki , Reinhard Lipowsky

Biological systems are majorly dependent on their property of bistability in order to exhibit nongenetic heterogeneity in terms of cellular morphology and physiology. Spatial patterns of phenotypically heterogeneous cells, arising due to…

定量方法 · 定量生物学 2023-01-25 Priya Chakraborty , Ushasi Roy , Mohit K. Jolly , Sayantari Ghosh

Bistability, or the coexistence of two stable phases, can be broken by a bias field $h$ destabilising one of the phases via the nucleation and growth of defects. Strong long-range interactions, $1/r^\alpha$ with $\alpha$ less than the…

统计力学 · 物理学 2025-06-13 Achilleas Lazarides , Andrea Pizzi

Cells attach to their environment by means of focal adhesions, which are molecular complexes that exhibit the remarkable ability to adapt to mechanical load by changing their size. Drawing from the biomolecular mechanisms underlying this…

软凝聚态物质 · 物理学 2025-03-17 Anton F. Burnet , Julia Müllner , Benedikt Sabass

Cell-cell adhesion is one the most fundamental mechanisms regulating collective cell migration during tissue development, homeostasis and repair, allowing cell populations to self-organize and eventually form and maintain complex tissue…

细胞行为 · 定量生物学 2022-11-16 Carles Falcó , Ruth E. Baker , José A. Carrillo

Single receptor-ligand bonds have finite lifetimes, so that biological systems can dynamically react to changes in their environment. In cell adhesion, adhesion bonds usually act cooperatively in adhesion clusters. Outside the cellular…

软凝聚态物质 · 物理学 2007-05-23 T. Erdmann , U. S. Schwarz

We illuminate the many-body effects underlying the structure, formation, and dissolution of cellular adhesion domains in the presence and absence of forces. We consider mixed Glauber-Kawasaki dynamics of a two-dimensional model of…

统计力学 · 物理学 2021-10-04 Kristian Blom , Aljaž Godec
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