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Huntington's disease (HD) is caused by CAG-repeat expansion in HTT, which lengthens the polyglutamine (polyQ) tract in huntingtin (HTT) and promotes misfolding and aggregation. While polyQ-length-dependent aggregation is well established,…

计算工程、金融与科学 · 计算机科学 2026-03-04 Jai Geddes-Nelson , Xiaochen Liu , Ken-Tye Yong

We present a model for the joint self-assembly of amphiphilic polymers and small amphiphilic molecules (surfactants) in a dilute aqueous solution. The polymer is assumed to consist of a hydrophilic backbone and a large number of hydrophobic…

软凝聚态物质 · 物理学 2007-05-23 H. Diamant , D. Andelman

Although common in nature, the self-assembly of small molecules at sold-liquid interfaces is difficult to control in artificial systems. The high mobility of dissolved small molecules limits their residence at the interface, typically…

We study a one-dimensional model of microtubule assembly/disassembly in which GTP bound to tubulins within the microtubule undergoes stochastic hydrolysis. In contrast to models that only consider a cap of GTP-bound tubulin, stochastic…

生物大分子 · 定量生物学 2015-05-13 Sumedha , Michael F Hagan , Bulbul Chakraborty

Interfaces are a most common motif in complex systems. To understand how the presence of interfaces affect hydrophobic phenomena, we use molecular simulations and theory to study hydration of solutes at interfaces. The solutes range in size…

软凝聚态物质 · 物理学 2014-09-05 Amish J. Patel , Patrick Varilly , Sumanth N. Jamadagni , Hari Acharya , Shekhar Garde , David Chandler

Polypeptides can self-assemble into hierarchically organized fibrils consisting of a stack of individually folded polypeptides driven together by hydrophobic interaction. Using a coarse grained model, we systematically studied this…

软凝聚态物质 · 物理学 2013-07-31 Ran Ni , Sanne Abeln , Marieke Schor , Martien A. Cohen Stuart , Peter G. Bolhuis

Hydrogen bonding plays a role in the microphase separation behavior of many block copolymers, such as those used in lithography, where the stronger interactions due to H-bonding can lead to a smaller period for the self-assembled…

软凝聚态物质 · 物理学 2018-05-28 E. Patyukova , T. Rottreau , R. Evans , P. D. Topham , M. J. Greenall

Complex colloidal cluster morphologies are desirable for the fabrication of advanced materials, such as photonic crystals and meta-materials, and can be formed through evaporation-driven packing. By coupling lattice Boltzmann and discrete…

软凝聚态物质 · 物理学 2026-05-07 Junyu Yang , Abhinav Naga , Xitong Zhang , Halim Kusumaatmaja

Recent studies of the hydration of micro- and nanoscale solutes have demonstrated a strong {\it coupling} between hydrophobic, dispersion and electrostatic contributions, a fact not accounted for in current implicit solvent models. We…

化学物理 · 物理学 2009-11-11 J. Dzubiella , J. M. J. Swanson , J. A. McCammon

Hydrophobic hydration plays a crucial role in self-assembly processes over multiple length-scales, but the extrapolation of molecular-scale models to larger length-scale hydration phenomena is sometimes not warranted. Scaled-particle…

生物物理 · 物理学 2007-05-23 Henry S. Ashbaugh , Lawrence R. Pratt

The stabilization of liquid biological products is a complex task that depends on the chemical composition of both the active ingredient and any excipients in solution. Frequently, a large number of unique excipients are required to…

软凝聚态物质 · 物理学 2024-07-02 Jonathan W. P. Zajac , Praveen Muralikrishnan , Caryn L. Heldt , Sarah L. Perry , Sapna Sarupria

We use appropriately defined short ranged reference models of liquid water to clarify the different roles local hydrogen bonding, van der Waals attractions, and long ranged electrostatic interactions play in the solvation and association of…

统计力学 · 物理学 2015-02-20 Richard C. Remsing , John D. Weeks

The quantum-dynamical mechanism of photoinduced subpicosecond exciton dissociation and the concomitant formation of a charge-separated state at a TFB:F8BT polymer heterojunction is elucidated. The analysis is based upon a two-state vibronic…

材料科学 · 物理学 2009-11-11 Hiroyuki Tamura , Eric R. Bittner , Irene Burghardt

We study the assembling of P3HT chains in vacuo by means of a combination of first principles density functional theory and model potential molecular dynamics. We find that, in the absence of any external constraints, the pi-pi interchain…

软凝聚态物质 · 物理学 2010-06-30 Claudio Melis , Alessandro Mattoni , Luciano Colombo

Motivated by single molecule experiments on biopolymers we explore equilibrium morphologies and force-extension behavior of copolymers with hydrophobic segments using Langevin dynamics simulations. We find that the interplay between…

软凝聚态物质 · 物理学 2013-10-15 Ankur Mishra , Ajay S. Panwar , Buddhapriya Chakrabarti

We study the self-assembly of colloidal microgel particles at a quasi-two-dimensional air-water interface of a drying droplet. Using bright-field microscopy, we demonstrate that increasing particle elasticity drives interfacial organization…

软凝聚态物质 · 物理学 2026-03-10 Vaibhav Raj Singh Parmar , Sayantan Chanda , Rituparno Mandal , Ranjini Bandyopadhyay

We introduce a mesoscale method for simulating hydrodynamic transport and self assembly of inhomogeneous polymer melts in pressure driven and drag induced flows. This method extends dynamic self consistent field theory (DSCFT) into the…

软凝聚态物质 · 物理学 2015-06-25 David M. Hall , Turab Lookman , Glenn H. Fredrickson , Sanjoy Banerjee

The presence of an expanded polyglutamine produces a toxic gain of function in huntingtin. Protein aggregation resulting from this gain of function is likely to be the cause of neuronal death. Two main mechanisms of aggregation have been…

生物大分子 · 定量生物学 2025-11-07 Guylaine Hoffner , Philippe Djian

As the beneficial effects of curcumin have often been reported to be limited to its small concentrations, we have undertaken a study to find the aggregation properties of curcumin in water by varying the number of monomers. Our molecular…

生物大分子 · 定量生物学 2015-06-22 Milan Kumar Hazra , Susmita Roy , Biman Bagchi

The non-wetting phenomena of water on certain solid surfaces have been under intensive study for decades, but the nature of hydrophobic/water interfaces remains controversial. Here a water/graphite interface is investigated with…

软凝聚态物质 · 物理学 2012-04-02 Ing-Shouh Hwang , Chih-Wen Yang , Yi-Hsien Lu
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