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The molecular mechanism of ion channel gating and substrate modulation is elusive for many voltage gated ion channels, such as eukaryotic sodium ones. The understanding of channel functions is a pressing issue in molecular biophysics and…

生物大分子 · 定量生物学 2016-11-15 Duan Chen , Guowei Wei

The dynamics of water in electrolyte solutions exhibits a striking, ion-specific anomaly: the diffusion coefficient of water is enhanced relative to the neat liquid in chaotropic CsI solutions, yet suppressed in kosmotropic NaCl solutions.…

化学物理 · 物理学 2026-04-17 Massimo Ciacchi , Ilnur Saitov , Nico Di Fonte , Isabella Daidone , Carlo Pierleoni

Many biological and artificial transport channels function without direct input of metabolic energy during a transport event and without structural rearrangements involving transitions from a 'closed' to an 'open' state. Nevertheless, such…

亚细胞过程 · 定量生物学 2009-11-13 Anton Zilman

We propose a simple discrete stochastic model for calcium dynamics in living cells. Specifically, the calcium concentration distribution is assumed to give rise to a set of probabilities for the opening/closing of channels which release…

patt-sol · 物理学 2009-10-31 Markus Baer , Martin Falcke , Herbert Levine , Lev S. Tsimring

The extent of ion pairing in solution is an important phenomenon to rationalise transport and thermodynamic properties of electrolytes. A fundamental measure of this pairing is the potential of mean force (PMF) between solvated ions. The…

化学物理 · 物理学 2024-04-11 Niamh O'Neill , Benjamin X. Shi , Kara Fong , Angelos Michaelides , Christoph Schran

Water-flow in carbon nanotubes (CNT's) starkly contradicts classical fluid mechanics, with permeabilities that can exceed no-slip Haagen-Poiseuille predictions by two to five orders of magnitude. Semi-classical molecular dynamics accounts…

材料科学 · 物理学 2022-07-27 Alberto Ambrosetti , Giorgio Palermo , Pier Luigi Silvestrelli

We investigate the dynamics of water confined in soft ionic nano-assemblies, an issue critical for a general understanding of the multi-scale structure-function interplay in advanced materials. We focus in particular on hydrated…

材料科学 · 物理学 2017-08-23 Quentin Berrod , Samuel Hanot , Armel Guillermo , Stefano Mossa , Sandrine Lyonnard

Ions in water are important in biology, from molecules to organs. Classically, ions in water are treated as ideal noninteracting particles in a perfect gas. Excess free energy of ion was zero. Mathematics was not available to deal…

生物大分子 · 定量生物学 2015-06-15 Bob Eisenberg

It is not yet clear what drives the adsorption of ions on detonation nanodiamonds (DNDs), which plays a critical role on the loading (unloading) of chemotherapeutic drugs on (from) the surface of DNDs in their targeted therapy applications.…

计算物理 · 物理学 2021-03-16 Farshad Saberi-Movahed , Donald W Brenner

The finely tuned structures of membrane channels allow selective passage of ions through the available aqueous pores. In order to understand channel function, it is crucial to locate the pore and study its physical and chemical properties.…

软凝聚态物质 · 物理学 2007-05-23 Z. Kuang , A. Liu , T. L. Beck

Membrane fluidity, well-known to be essential for cell functions, is obviously affected by copper. However, the underlying mechanism is still far from being understood, especially on the atomic level. Here, we unexpectedly observed that a…

生物物理 · 物理学 2017-05-16 Xiankai Jiang , Jinjin Zhang , Bo Zhou , Xiaojuan Hu , Zhi Zhu , Chao Chang , Junhong Lü , Bo Song

Complex fluids flow in complex ways in complex structures. Transport of water and various organic and inorganic molecules in the central nervous system are important in a wide range of biological and medical processes [C. Nicholson, and S.…

生物物理 · 物理学 2021-05-19 Yi Zhu , Shixin Xu , Robert S. Eisenberg , Huaxiong Huang

The interaction of phosphate groups with ions in an aqueous environment has a strong impact on the structure and folding processes of DNA and RNA. The dynamic variety of ionic arrangements, including both contact pairs and water separated…

化学物理 · 物理学 2019-10-07 Jakob Schauss , Achintya Kundu , Benjamin P. Fingerhut , Thomas Elsaesser

Travelling waves of neural firing activity are observed in brain tissue as a part of various sensory, motor and cognitive processes. They represent an object of major interest in the study of excitable networks, with analysis conducted in…

神经元与认知 · 定量生物学 2025-11-10 Henry D. J. Kerr , Peter Ashwin , Kyle C. A. Wedgwood

We study the flow of a pressure-driven foam through a straight channel using numerical simulations, and examine the effects of a tuneable attractive potential between bubbles. This potential, which accounts for the effects of disjoining…

软凝聚态物质 · 物理学 2019-11-15 Karthik Menon , Rama Govindarajan , Shubha Tewari

The ability of semipermeable membranes to selectively impede the transport of undesirable solutes is key to many applications. Yet, obtaining a systematic understanding of how membrane structure affects selectivity remains elusive due to…

软凝聚态物质 · 物理学 2020-01-03 Hessam Malmir , Razi Epsztein , Menachem Elimelech , Amir Haji-Akbari

The flow of ions through permeable channels causes voltage drop in physiological nanodomains such as synapses, dendrites and dendritic spines, and other protrusions. How the voltage changes around channels in these nanodomains has remained…

软凝聚态物质 · 物理学 2025-01-10 Frédéric Paquin-Lefebvre , David Holcman

Two-dimensional (2D) materials are suitable hosts for the intercalation of extrinsic guest ions such as Li+, Na+ and K+ as the interlayer coupling is weak. This allows ion intercalation engineering of 2D materials, which may be a key to…

In this work we have theoretically investigated how the action potential generation and its associated intrinsic properties are affected in presence of ion channel blockers by adapting Gillepie's stochastic simulation technique on a very…

生物物理 · 物理学 2018-10-02 Krishnendu Pal , Gautam Gangopadhyay

Ionic Coulomb blockade is one of the mesoscopic effects in ion transport revealing the quantized nature of ionic charges, which is of crucial importance to our understanding of the sub-continuum transport in nanofluidics and the mechanism…

介观与纳米尺度物理 · 物理学 2020-12-29 Fanfan Chen , Zonglin Gu , Chunxiao Zhao , Yuang Chen , Xiaowei Jiang , Zhi He , Yuxian Lu , Ruhong Zhou , Jiandong Feng
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