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In this study, we present a comprehensive exploration of formation of different phases in lipid molecules using a coarse-grained implicit solvent model, where each lipid molecule is represented as a rigid, three-bead rod-like structure. Our…

软凝聚态物质 · 物理学 2023-12-13 Biplab Bawali , Alokmay Datta , Jayashree Saha

We study, using dissipative particle dynamics simulations, the effect of active lipid flip-flop on model fluid bilayer membranes. We consider both cases of symmetric as well as asymmetric flip-flops. Symmetric flip-flop leads to a steady…

软凝聚态物质 · 物理学 2009-11-13 Sanoop Ramachandran , P. B. Sunil Kumar , Mohamed Laradji

We propose a model describing liquid-solid phase coexistence in mixed lipid membranes by including explicitly the occurrence of a rippled phase. For a single component membrane, we employ a previous model in which the membrane thickness is…

软凝聚态物质 · 物理学 2012-01-31 N. Shimokawa , S. Komura , D. Andelman

A question of considerable interest to cell membrane biology is whether phase segregated domains across an asymmetric bilayer are strongly correlated with each other and whether phase segregation in one leaflet can induce segregation in the…

生物物理 · 物理学 2015-06-17 Anirban Polley , Satyajit Mayor , Madan Rao

Lipid bilayer membranes below their main transition have two tilt order parameters, corresponding to the two monolayers. These two tilts may be strongly coupled to membrane shape but only weakly coupled to each other. We discuss some…

软凝聚态物质 · 物理学 2009-10-28 Udo Seifert , Julian Shillcock , Philip Nelson

We present a phenomenological theory of phase transitions in achiral lipid membranes in terms of two coupled order parameters -- a scalar order parameter describing lipid chain melting, and a vector order parameter describing the tilt of…

软凝聚态物质 · 物理学 2010-11-16 Md. Arif Kamal , Antara Pal , V. A. Raghunathan , Madan Rao

The cell membrane is inherently asymmetric and heterogeneous in its composition, a feature that is crucial for its function. Using atomistic molecular dynamics simulations, the physical properties of a 3-component asymmetric mixed lipid…

软凝聚态物质 · 物理学 2012-04-04 Anirban Polley , Satyavani Vemparala , Madan Rao

Morphological transitions of phase separation associated with the asymmetry of lipid composition were investigated using micrometer-sized vesicles of lipid bilayers made from a lipid mixture. The complete macro-phase-separated morphology…

生物物理 · 物理学 2015-04-14 Shunsuke F. Shimobayashi , Masatoshi Ichikawa , Takashi Taniguchi

A model of lipid bilayers made of a mixture of two lipids with different average compositions on both leaflets, is developed. A Landau hamiltonian describing the lipid-lipid interactions on each leaflet, with two lipidic fields $\psi_1$ and…

软凝聚态物质 · 物理学 2014-08-28 Guillaume Gueguen , Nicolas Destainville , Manoel Manghi

The structure of the ripple phase of phospholipid membranes remains poorly understood in spite of a large number of theoretical studies, with many experimentally established structural features of this phase unaccounted for. In this article…

软凝聚态物质 · 物理学 2012-03-28 Md. Arif Kamal , Antara Pal , V. A. Raghunathan , Madan Rao

We simulate a phase-separating a bilayer in which the leaflets experience a direct coupling favouring local compositional symmetry ("registered" bilayer phases), and an indirect coupling due to hydrophobic mismatch that favours strong local…

软凝聚态物质 · 物理学 2016-04-12 John J. Williamson , Peter D. Olmsted

We present Monte Carlo simulations of an ultra coarse-grained lipid bilayer with different number of lipids on both leaflets. In the simulations, we employ a new method for measuring the elastic parameters of the membrane, including the…

软凝聚态物质 · 物理学 2025-05-20 Oded Farago

Atomistic molecular dynamics simulations have reached a degree of maturity that makes it possible to investigate the lipid polymorphism of model bilayers over a wide range of temperatures. However if both the fluid $L_{\alpha}$ and tilted…

软凝聚态物质 · 物理学 2021-02-09 Vivien Walter , Céline Ruscher , Adrien Gola , Carlos M. Marques , Olivier Benzerara , Fabrice Thalmann

A coarse-grained molecular model, which consists of a spherical particle and an orientation vector, is proposed to simulate lipid membrane on a large length scale. The solvent is implicitly represented by an effective attractive interaction…

软凝聚态物质 · 物理学 2015-05-20 Hiroshi Noguchi

We have calculated the electron density maps of the ripple phase of dimyristoylphosphatidylcholine (DMPC) and palmitoyl-oleoyl phosphatidylcholine (POPC) multibilayers at different temperatures and fixed relative humidity. Our analysis…

软凝聚态物质 · 物理学 2009-10-31 Kheya Sengupta , V. A. Raghunathan , John Katsaras

Diffusion in cell membranes is not just simple two-dimensional Brownian motion, but typically depends on the timescale of the observation. The physical origins of this anomalous sub-diffusion are unresolved, and model systems capable of…

生物物理 · 物理学 2017-10-25 H. L. E. Coker , M. R. Cheetham , D. R. Kattnig , Y. J. Wang , S. Garcia-Manyes , M. I. Wallace

Lipid membranes regulate the flow of materials and information between cells and their organelles. Further, lipid composition and morphology can play a key role in regulating a variety of biological processes. For example, viral uptake,…

生物大分子 · 定量生物学 2009-05-12 Tristan Ursell , Rob Phillips

Bilayer lipid membranes (BLMs) are an essential component of many biological systems, forming a functional barrier between the cell and the surrounding environment. When the membrane relaxes from a structural perturbation, the dynamics of…

软凝聚态物质 · 物理学 2015-07-27 R. J. Bingham , S. W. Smye , P. D. Olmsted

We study the stress distribution profiles and the height and thickness fluctuations of lipid membranes in the tilted gel state by Monte Carlo simulations of a generic coarse-grained model for lipid membranes, which reproduces many known…

软凝聚态物质 · 物理学 2010-02-24 Beate West , Friederike Schmid

Understanding the (de)mixing behavior of multicomponent lipid bilayers is an important step towards unraveling the nature of spatial composition heterogeneities in cellular membranes and their role in biological function. We use…

软凝聚态物质 · 物理学 2018-05-17 Shushan He , Lutz Maibaum
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