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Many advances in research regarding immuno-interactions with cancer were developed with the help of ordinary differential equation (ODE) models. These models, however, are not effectively capable of representing problems involving…

计算工程、金融与科学 · 计算机科学 2013-06-03 Grazziela P. Figueredo , Peer-Olaf Siebers , Uwe Aickelin

We study dynamics emergent from a two-dimensional reaction--diffusion process modelled via a finite lattice dynamical system, as well as an analogous PDE system, involving spatially nonlocal interactions. These models govern the evolution…

组织与器官 · 定量生物学 2018-11-14 Andrew L. Krause , Dmitry Beliaev , Robert A. Van Gorder , Sarah L. Waters

Cells within living soft biological tissues seem to promote the maintenance of a mechanical state within a defined range near a so-called set-point. This mechanobiological process is often referred to as mechanical homeostasis. During this…

Agent-based (AB) or Cellular Automata (CA) models are rule based and are a relatively simple discrete method that can be used to simulate complex interactions of many agents or cells. The relative ease of implementing the computational…

动力系统 · 数学 2019-09-11 Michael A. Yereniuk , Sarah D. Olson

Existing studies for automated melanoma diagnosis are based on single-time point images of lesions. However, melanocytic lesions de facto are progressively evolving and, moreover, benign lesions can progress into malignant melanoma.…

计算机视觉与模式识别 · 计算机科学 2020-06-22 Zhen Yu , Jennifer Nguyen , Xiaojun Chang , John Kelly , Catriona Mclean , Lei Zhang , Victoria Mar , Zongyuan Ge

Human skin oils are a major sink for ozone in densely occupied indoor environments. Understanding how the resulting volatile and semivolatile organic oxidation products influence indoor air chemistry requires accurate representations not…

软凝聚态物质 · 物理学 2026-01-21 Rinto Thomas , Praveen Ranganath Prabhakar , Douglas J. Tobias , Michael von Domaros

We describe a percolation-type approach to modeling of the processes of aging and certain other properties of tissues analyzed as systems consisting of interacting cells. Tissues are considered as structures made of regular healthy,…

统计力学 · 物理学 2016-01-28 Vladimir Privman , Vyacheslav Gorshkov , Sergiy Libert

A mathematical model is proposed for shape evolution and locomotion of fish epidermal keratocytes on elastic substrates. The model is based on mechanosensing concepts: cells apply contractile forces onto the elastic substrate, while cell…

生物物理 · 物理学 2021-02-19 Zhiwen Zhang , Phoebus Rosakis , Thomas Y. Hou , Guruswami Ravichandran

In this paper, we derive a new chemotaxis model with degenerate diffusion and density-dependent chemotactic sensitivity, and we provide a more realistic description of cell migration process for its early and late stages. Different from the…

偏微分方程分析 · 数学 2023-07-19 Tianyuan Xu , Shanming Ji , Chunhua Jin , Ming Mei , Jingxue Yin

We introduce and analyze a model for the transport of particles or energy in extended lattice systems. The dynamics of the model acts on a discrete phase space at discrete times but has nonetheless some of the characteristic properties of…

数学物理 · 物理学 2015-06-12 Raphael Lefevere

Mathematical models describing the spatial spreading and invasion of populations of biological cells are often developed in a continuum modelling framework using reaction-diffusion equations. While continuum models based on linear diffusion…

元胞自动机与格子气 · 物理学 2024-01-23 Matthew J Simpson , Keeley M Murphy , Scott W McCue , Pascal R Buenzli

A continuum model of epithelial tissue mechanics was formulated using cellular-level mechanical ingredients and cell morphogenetic processes, including cellular shape changes and cellular rearrangements. This model can include finite…

组织与器官 · 定量生物学 2017-09-06 Shuji Ishihara , Philippe Marcq , Kaoru Sugimura

Stem cell heterogeneity is essential for the homeostasis in tissue development. This paper established a general formulation for understanding the dynamics of stem cell regeneration with cell heterogeneity and random transitions of…

种群与进化 · 定量生物学 2024-07-12 Jinzhi Lei

Cell shape is determined by a balance of intrinsic properties of the cell as well as its mechanochemical environment. Inhomogeneous shape changes underly many morphogenetic events and involve spatial gradients in active cellular forces…

生物物理 · 物理学 2018-04-04 Kinjal Dasbiswas , Edouard Hannezo , Nir. S. Gov

Cell sorting, whereby a heterogeneous cell mixture segregates and forms distinct homogeneous tissues, is one of the main collective cell behaviors at work during development. Although differences in interfacial energies are recognized to be…

软凝聚态物质 · 物理学 2022-07-15 Marc Durand

Gradual transformation of the epidermal stem cells to corneocytes involves a chain of chronologically well-arranged events that mostly stimulated locally by their neighbors. Cell diversity that observed during the differentiation through…

组织与器官 · 定量生物学 2008-04-22 A. Mezentsev

In the present article the diffusion equation is used to model the spatio-temporal dynamics of a tumor, taking into account the heterogeneous of the medium. This approach makes it possible to take into account the complex geometric shape of…

生物物理 · 物理学 2023-02-07 Maxim V. Polyakov , Valeria V. Ten

We have used molecular dynamics simulations for a comprehensive study of phase separation in a two-dimensional single component off-lattice model where particles interact through the Lennard-Jones potential. Via state-of-the-art methods we…

软凝聚态物质 · 物理学 2021-01-04 Jiarul Midya , Subir K. Das

The competition between cancer cells and immune system cells in inhomogeneous conditions is described at cell scale within the framework of the thermostatted kinetic theory. Cell learning is reproduced by increased cell activity during…

细胞行为 · 定量生物学 2021-04-29 Léon Masurel , Carlo Bianca , Annie Lemarchand

We present an Equation/Variable free machine learning (EVFML) framework for the control of the collective dynamics of complex/multiscale systems modelled via microscopic/agent-based simulators. The approach obviates the need for…