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Cell walls define a cell shape in bacteria. They are rigid to resist large internal pressures, but remarkably plastic to adapt to a wide range of external forces and geometric constraints. Currently, it is unknown how bacteria maintain…

软凝聚态物质 · 物理学 2014-05-01 Ariel Amir , Farinaz Babaeipour , Dustin B. McIntosh , David R. Nelson , Suckjoon Jun

A stochastic model is used to assess the effect of external parameters on the development of submerged biofilms on smooth and rough surfaces. The model includes basic cellular mechanisms, such as division and spreading, together with an…

软凝聚态物质 · 物理学 2024-01-17 David Rodriguez , Baldvin Einarsson , Ana Carpio

The buckling and twisting of slender, elastic fibers is a deep and well-studied field. A slender elastic rod that is twisted with respect to a fixed end will spontaneously form a loop, or hockle, to relieve the torsional stress that builds.…

软凝聚态物质 · 物理学 2021-08-03 Adam Fortais , Elsie Loukiantchenko , Kari Dalnoki-Veress

A strained epitaxial film deposited on a deformable substrate undergoes a morphological instability relaxing the elastic energy by surface diffusion. The nonlinear and nonlocal dynamical equations of such films with wetting interactions are…

统计力学 · 物理学 2011-11-16 Jean-Noel Aqua , Thomas Frisch , Alberto Verga

Structural elements made of laminated hardwood are increasingly used in timber engineering. In this combined numerical and experimental approach, damage onset and propagation in uni-directional and cross-laminated samples out of European…

Membrane pores are implicated in several critical functions, including cell fusion and the transport of signaling molecules for intercellular communication. However, these structural features are often difficult to probe directly. Droplet…

Curvature in biological membranes can be generated by a variety of different molecular mechanisms such as protein scaffolding, lipid or protein asymmetry, cytoskeletal forces, etc. These mechanisms have the net effect of generating stresses…

The measurement of cellular traction forces on soft elastic substrates has become a standard tool for many labs working on mechanobiology. Here we review the basic principles and different variants of this approach. In general, the…

定量方法 · 定量生物学 2015-06-09 Ulrich S. Schwarz , Jerome R. D. Soine

Many processes in eukaryotic cells, including cell motility, rely on the growth of branched actin networks from surfaces. Despite its central role the mechano-chemical coupling mechanisms which guide the growth process are poorly…

软凝聚态物质 · 物理学 2015-06-23 Karin John , Denis Caillerie , Chaouqi Misbah

Dynamic trees are mixtures of tree structured belief networks. They solve some of the problems of fixed tree networks at the cost of making exact inference intractable. For this reason approximate methods such as sampling or mean field…

机器学习 · 计算机科学 2013-01-18 Amos J. Storkey

The eye grows during childhood to position the retina at the correct distance behind the lens to enable focused vision, a process called emmetropization. Animal studies have demonstrated that this growth process is dependent upon visual…

生物物理 · 物理学 2021-01-22 L. S. Kimpton , B. J. Walker , C. L. Hall , B. Bintu , D. Crosby , H. M. Byrne , A. Goriely

By revisiting a model proposed in [45], we address the accretive growth of a viscoelastic solid at large strains. The accreted material is assumed to accumulate at the boundary of the body in an unstressed state. The growth process is…

偏微分方程分析 · 数学 2025-08-28 Andrea Chiesa , Ulisse Stefanelli

The hygro-mechanical behavior of a hierarchical cellular material, i.e. growth rings of softwood is investigated using a two-scale micro-mechanics model based on a computational homogenization technique. The lower scale considers the…

材料科学 · 物理学 2015-09-22 Ahmad Rafsanjani , Dominique Derome , Falk K. Wittel , Jan Carmeliet

We develop a magnetic ribbon model for molecular cloud filaments. These result from turbulent compression in a molecular cloud in which the background magnetic field sets a preferred direction. We use our model to calculate a synthetic…

星系天体物理 · 物理学 2017-03-17 Sayantan Auddy , Shantanu Basu , Takahiro Kudoh

What are the general principles that allow proper growth of a tissue or an organ? A growing leaf is an example of such a system: it increases its area by orders of magnitude, maintaining a proper (usually flat) shape. How can this be…

组织与器官 · 定量生物学 2020-05-13 S. Armon , M. Moshe , E. Sharon

Cells exhibit qualitatively different behaviors on substrates with different rigidities. The fact that cells are more polarized on the stiffer substrate motivates us to construct a two-dimensional cell with the distribution of focal…

生物物理 · 物理学 2017-07-26 Guangyuan Yu , Jingchen Feng , Haoran Man , Herbert Levine

In biological systems, the growth of cells, tissues, and organs is influenced by mechanical cues. Locally, cell growth leads to a mechanically heterogeneous environment as cells pull and push their neighbors in a cell network. Despite this…

Our understanding of the elasticity and rheology of disordered materials, such as granular piles, foams, emulsions or dense suspensions relies on improving experimental tools to characterize their behaviour at the particle scale. While 2D…

软凝聚态物质 · 物理学 2010-09-24 Mohammad Saadatfar , Adrian P. Sheppard , Tim J. Senden , Alexandre J. Kabla

A model of the regular arrangement of leaves on a plant stem (phyllotactic patterns) is proposed, based on a new plant pattern algorithm. Tripartite patterning is proposed to occur by the interaction of two signaling pathways. Each pathway…

组织与器官 · 定量生物学 2009-07-29 F. W. Cummings

We study the pinning of a two-dimensional membrane to a patterned substrate within elastic theory both in the bending rigidity and in the strain dominated regimes. We find that both the in-plane strains and the bending rigidity can lead to…

材料科学 · 物理学 2011-04-19 S. Viola Kusminskiy , D. K. Campbell , A. H. Castro Neto , F. Guinea