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We introduce a general theoretical framework to study the shape dynamics of actively growing and remodeling surfaces. Using this framework we develop a physical model for growing bacterial cell walls and study the interplay of cell shape…

生物物理 · 物理学 2016-04-08 Shiladitya Banerjee , Norbert F. Scherer , Aaron R. Dinner

We present a model for mechanically-induced pattern formation in growing biological tissues and discuss its application to the development of leaf venation networks. Drawing an analogy with phase transitions in solids, we use a phase field…

软凝聚态物质 · 物理学 2010-10-29 F. Corson , H. Henry , M. Adda-Bedia

In many adult tissues, stem cells and differentiated cells are not homogeneously distributed : stem cells are arranged in periodic "niches", and differentiated cells are constantly produced and migrate out of these niches. In this article,…

生物物理 · 物理学 2016-03-23 Edouard Hannezo , Alice Coucke , Jean-François Joanny

We investigate the wrinkling dynamics of an elastic filament immersed in a viscous fluid submitted to compression at a finite rate with experiments and by combining geometric nonlinearities, elasticity, and slender body theory. The drag…

软凝聚态物质 · 物理学 2017-08-30 Julien Chopin , Moumita Dasgupta , Arshad Kudrolli

Experiments conducted on two-dimensional twisted materials have revealed a plethora of moir\'e patterns with different forms and shapes. The formation of these patterns is usually attributed to the presence of small strains in the samples,…

介观与纳米尺度物理 · 物理学 2024-05-27 Federico Escudero , Andreas Sinner , Zhen Zhan , Pierre A. Pantaleón , Francisco Guinea

We investigate the stability and geometrically non-linear dynamics of slender rods made of a linear isotropic poroelastic material. Dimensional reduction leads to the evolution equation for the shape of the poroelastica where, in addition…

软凝聚态物质 · 物理学 2016-08-31 J. M. Skotheim , L. Mahadevan

The dynamics of elastocapillary thinning in high molecular weight polymer solutions are re-examined using high-speed digital video microscopy. At long times, the evolution of the viscoelastic thread deviates from self-similar exponential…

其他凝聚态物理 · 物理学 2009-11-11 Monica S. N. Oliveira , Gareth H. McKinley

Living tissues show an extraordinary adaptiveness to strain, which is crucial for their proper biological functioning. The physical origin of this mechanical behaviour has been widely investigated using reconstituted networks of collagen…

软凝聚态物质 · 物理学 2019-02-25 Federica Burla , Justin Tauber , Simone Dussi , Jasper van der Gucht , Gijsje H. Koenderink

Engineered bacteria in which motility is reduced by local cell density generate periodic stripes of high and low density when spotted on agar plates. We study theoretically the origin and mechanism of this process in a kinetic model that…

软凝聚态物质 · 物理学 2015-06-04 Xiongfei Fu , Lei-Han Tang , Chenli Liu , Jian-Dong Huang , Terence Hwa , Peter Lenz

Large-scale force generation is essential for biological functions such as cell motility, embryonic development, and muscle contraction. In these processes, forces generated at the molecular level by motor proteins are transmitted by…

软凝聚态物质 · 物理学 2016-04-05 Pierre Ronceray , Chase Broedersz , Martin Lenz

Many tissues take the form of thin sheets, being only a single cell thick, but millions of cells wide. These tissue sheets can bend and buckle in the third dimension. In this work, we investigated the growth and shrinkage of suspended and…

生物物理 · 物理学 2024-11-01 Hiroshi Noguchi , Jens Elgeti

Phylogenetic networks generalize phylogenetic trees by allowing the modelization of events of reticulate evolution. Among the different kinds of phylogenetic networks that have been proposed in the literature, the subclass of binary…

数据结构与算法 · 计算机科学 2020-07-01 Gabriel Cardona , Joan Carles Pons , Celine Scornavacca

This paper presents an experimental investigation on pattern formation and evolution in bilayered tubular organs using swelling deformation of polydimethylsiloxane (PDMS) and aims at supplying a thorough comparison with theoretical and…

软凝聚态物质 · 物理学 2022-02-15 Rui-Cheng Liu , Lishuai Jin , Zongxi Cai , Yang Liu

Simulations are used to examine the microscopic origins of strain hardening in polymer glasses. While traditional entropic network models can be fit to the total stress, their underlying assumptions are inconsistent with simulation results.…

材料科学 · 物理学 2009-11-13 Robert S. Hoy , Mark O. Robbins

The buckling of a soft elastic sample under growth or swelling has highlighted a new interest in materials science, morphogenesis, and biology or physiology. Indeed, the change of mass or volume is a common fact of any living species, and…

软凝聚态物质 · 物理学 2023-09-21 Martine Ben Amar

Strain stiffening of protein networks is explored by means of a finite strain analysis of a two-dimensional network model of cross-linked semiflexible filaments. The results show that stiffening is caused by non-affine network…

软凝聚态物质 · 物理学 2009-11-11 P. R. Onck , T. Koeman , T. Van Dillen , E. Van der Giessen

In this article, we introduce a framework to investigate the growth of nano-crystallites in a polymer matrix numerically. This framework combines the Flory theory of entropic elasticity with phase-field approaches commonly used to model…

软凝聚态物质 · 物理学 2022-01-26 Rabia Laghmach , Nicolas Candau , Laurent Chazeau , Thierry Biben

Tissue engineering aims to grow artificial tissues \emph{in vitro} to replace those in the body that have been damaged through age, trauma or disease. A recent approach to engineer artificial cartilage involves seeding cells within a…

软凝聚态物质 · 物理学 2017-12-05 M. J. Chen , L. S. Kimpton , J. P. Whiteley , M. Castilho , J. Malda , C. P. Please , S. L. Waters , H. M. Byrne

Crosslinked semi-flexible and flexible filaments that are actively deformed by molecular motors occur in various natural settings, such as the ordered eukaryotic flagellum, and the disordered cytoskeleton. The deformation of these composite…

生物物理 · 物理学 2018-10-02 Arvind Gopinath , Raghunath Chelakkot , L. Mahadevan

Dynamics of non-Brownian flexible fibers in Poiseuille flow between two parallel planar solid walls is evaluated from the Stokes equations, solved numerically by an accurate multipole code HYDROMULTIPOLE. Fibers migrate towards a critical…

软凝聚态物质 · 物理学 2012-08-14 Agnieszka M. Slowicka , Eligiusz Wajnryb , Maria L. Ekiel-Jezewska