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The motion of a eukaryotic cell presents a variety of interesting and challenging problems from both a modeling and a computational perspective. The processes span many spatial scales (from molecular to tissue) as well as disparate time…

细胞行为 · 定量生物学 2010-11-25 Ben Vanderlei , James J. Feng , Leah Edelstein-Keshet

Kinetic equations for the stationary state distribution function of ions moving through narrow pores are solved for a number of one-dimensional models of single ion transport. Ions move through pores of length $L$, under the action of a…

软凝聚态物质 · 物理学 2009-11-10 Jaroslaw Piasecki , Rosalind J. Allen , Jean-Pierre Hansen

Cellular bioelectricity describes the biological phenomenon in which cells in living tissue generate and maintain patterns of voltage gradients induced by differing concentrations of charged ions. A growing body of research suggests that…

分布式、并行与集群计算 · 计算机科学 2018-09-27 Seth Gilbert , James Maguire , Calvin Newport

We present an efficient method for modeling the single and double ionization dynamics of the H$_2$ molecule in ultrashort intense laser fields. This method is based on a semi-analytical approach to calculate the time-dependent single and…

量子物理 · 物理学 2025-11-04 Jean-Nicolas Vigneau , Thanh-Tung Nguyen Dang , Eric Charron

A kinetic theory is developed to describe radiating electrons whose motion is governed by the Lorentz-Dirac equation. This gives rise to a generalized Vlasov equation coupled to an equation for the evolution of the physical submanifold of…

数学物理 · 物理学 2015-06-11 A. Noble , J. Gratus , D. A. Burton , D. A. Jaroszynski

We present numerical simulations of ultrafast multiphoton ionization dynamics in a two-dimensional atomic model driven by co- and counterrotating circularly polarized single-color and bichromatic carrier envelope phase (CEP) stable…

原子物理 · 物理学 2020-07-15 T. Bayer , Ch. Philipp , K. Eickhoff , M. Wollenhaupt

When plotted in linear transformations of the Michaelis-Menten equation, ion uptake in plants has been shown to be multiphasic, i.e. to be represented by a series of straight lines separated by discontinuous transitions (Nissen 1971, 1974,…

生物物理 · 物理学 2017-12-06 Per Nissen

In our last paper, we have reported the direct interact between energetic ions and DNA, and its components, pointing out that damage to DNA is actually of highest biological consequence, as the integrity of DNA sequence is essential for…

生物物理 · 物理学 2008-07-02 Wei Wang , Zengliang Yu , Wenhui Su

Electroporation is increasingly used as a percutaneous ablation technique for tumours located near vital structures. Although effective, tumour regrowth may still occur. At the same time, in vitro studies on cell monolayers have shown that…

In this work we approach cell migration under a large-scale assumption, so that the system reduces to a particle in motion. Unlike classical particle models, the cell displacement results from its internal activity: the cell velocity is a…

细胞行为 · 定量生物学 2018-08-02 Christèle Etchegaray , Nicolas Meunier

The strong coupling between intense laser fields and valence electrons in molecules causes a distortion of the potential energy hypersurfaces which determine the motion of nuclei in a molecule and influences possible reaction pathways. The…

A one-dimensional Particle-In-Cell Monte Carlo Collisions (PIC-MCC) method has been used to model the development and propagation of ionization waves in neon and argon positive columns. Low current conditions are considered, i.e. conditions…

等离子体物理 · 物理学 2022-02-08 J. Boeuf

The potential energy curves, permanent and transition dipole moments, and the static dipolar polarizability, of molecular ions composed of one alkali-metal atom and a Strontium ion are determined with a quantum chemistry approach. The…

量子物理 · 物理学 2015-05-27 Mireille Aymar , Romain Guérout , Olivier Dulieu

Understanding and controlling the electronic as well as ro-vibrational motion and, thus, the entire chemical dynamics in molecules is the ultimate goal of ultrafast laser and imaging science. In photochemistry, laser-induced dissociation…

We show that when the unparticle sector is coupled to the Standard Model, unparticle excitations can decay to Standard Model particles. This radically modifies the signals of unparticle production. We present a method for the calculation of…

高能物理 - 唯象学 · 物理学 2009-02-02 Arvind Rajaraman

We study the rate of activated motion over multiple barriers, in particular the correlated double-jump of an adatom diffusing on a missing-row reconstructed Platinum (110) surface. We develop a Transition Path Theory, showing that the…

材料科学 · 物理学 2009-10-30 Joachim Jacobsen , Karsten W. Jacobsen , James P. Sethna

Extensions have been made recently to the coronal approximation for the purpose of modelling line emission from carbon and oxygen in the lower solar atmosphere. The same modelling is used here for other elements routinely observed in the…

太阳与恒星天体物理 · 物理学 2021-06-30 R. P. Dufresne , G. Del Zanna , P. J. Storey

Aspects of cell metabolism are modeled by ordinary differential equations describing the change of intracellular chemical concentrations. There is a correspondence between this dynamical system and a complex network. As in the classic…

Virtually all cells use energy and ion-specific membrane pumps to maintain large transmembrane gradients of Na$^+$, K$^+$, Cl$^-$, Mg$^{++}$, and Ca$^{++}$. Although they consume up to 1/3 of a cell's energy budget, the corresponding…

细胞行为 · 定量生物学 2024-03-18 Dipesh Niraula , Issam El Naqa , Jack Adam Tuszynski , Robert A. Gatenby

We extend the semiclassical two-step model [Phys. Rev. A 94, 013415 (2016)] to include a multielectron polarization-induced dipole potential. Using this model we investigate the imprints of multielectron effects in the momentum…

原子物理 · 物理学 2018-08-22 N. I. Shvetsov-Shilovski , M. Lein , L. B. Madsen