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Several stochastic simulation algorithms (SSAs) have been recently proposed for modelling reaction-diffusion processes in cellular and molecular biology. In this paper, two commonly used SSAs are studied. The first SSA is an on-lattice…

生物物理 · 物理学 2015-05-13 Radek Erban , S Jonathan Chapman

In this paper, we construct approximations of the microscopic solution of a nonlinear reaction--diffusion equation in a domain consisting of two bulk-domains, which are separated by a thin layer with a periodic heterogeneous structure. The…

偏微分方程分析 · 数学 2021-12-03 Markus Gahn , Willi Jäger , Maria Neuss-Radu

We develop two-dimensional Brownian dynamics simulations to examine the motion of disks under thermal fluctuations and Hookean forces. Our simulations are designed to be experimental-like, since the experimental conditions define the…

软凝聚态物质 · 物理学 2017-05-26 Manuel Pancorbo , Miguel A. Rubio , P. Domínguez-García

We study the asymptotic behaviour of a system of nonlinear reaction--diffusion--advection equations in a domain consisting of two bulk regions connected via microscopic channels distributed within a thin membrane. Both the width of the…

偏微分方程分析 · 数学 2025-12-15 Lucas M. Fix , Gianna Götzmann , Malte A. Peter , Jan-F. Pietschmann

A numerical method to efficiently solve for mixing and reaction of scalars in a two-dimensional flow field at large P\'eclet numbers but otherwise arbitrary Damk\"ohler numbers is reported. We consider a strip of one reactant in a pool of…

流体动力学 · 物理学 2016-06-17 Aditya Bandopadhyay , Tanguy Le Borgne , Yves Méheust

A method to calculate reactions in quantum mechanics is outlined. It is advantageous, in particular, in problems with many open channels of various nature i.e. when energy is not low. In the method there is no need to specify reaction…

核理论 · 物理学 2017-01-06 V. D. Efros

Many cell signaling pathways involve the diffusion of messengers that bind/unbind to intracellular components. Quantifying their net transport rate under different conditions, then requires having separate estimates of their free diffusion…

亚细胞过程 · 定量生物学 2017-06-21 Lorena Sigaut , Cecilia Villarruel , María Laura Ponce , Silvina Ponce Dawson

The practice-based learning methodologies offer to undergraduate professors different ways to illustrate certain general physic principles. Traditional experimental workbenches have been extensively used during decades for academic lessons…

流体动力学 · 物理学 2013-10-24 Roberto Serrano-López , Santiago Cuesta-López , Oscar Tapia-Júdez , Jorge Fradera

In this paper, we describe ongoing work to investigate the properties of the heat spreader, and its implication on architecture research. In specific, we conduct two experiments to quantify the heat distribution across the surface of a…

其他计算机科学 · 计算机科学 2014-02-28 Seema Sethia , Shouri Chatterjee , Sunil Kale , Amit Gupta , Smruti R. Sarangi

This paper treats the solvability of a semilinear reaction-diffusion system, which incorporates transport (diffusion) and reaction effects emerging from two separated spatial scales: $x$ - macro and $y$ - micro. The system's origin connects…

偏微分方程分析 · 数学 2012-02-10 Tasnim Fatima , Adrian Muntean , Toyohiko Aiki

We study reaction-diffusion processes with multi-species of particles and hard-core interaction. We add boundary driving to the system by means of external reservoirs which inject and remove particles, thus creating stationary currents. We…

数学物理 · 物理学 2023-08-16 Francesco Casini , Cristian Giardina , Cecilia Vernia

The propagation of unstable interfaces is at the origin of remarkable patterns that are observed in various areas of science as chemical reactions, phase transitions, growth of bacterial colonies. Since a scalar equation generates usually…

偏微分方程分析 · 数学 2014-01-31 Michal Kolwalczyk , Benoit Perthame , Nicolas Vauchelet

The paper deals with reaction-diffusion equations involving a hysteretic discontinuity in the source term, which is defined at each spatial point. In particular, such problems describe chemical reactions and biological processes in which…

偏微分方程分析 · 数学 2014-04-17 Pavel Gurevich , Roman Shamin , Sergey Tikhomirov

Chemical reactions are a prominent feature of molecular communication (MC) systems, with no direct parallels in wireless communications. While chemical reactions may be used inside the transmitter nodes, receiver nodes or the communication…

A reaction-diffusion system with mass conservation modelling cell polarity is considered. A range of the parameters is found where the solution converges exponentially to the constant equilibrium and the $\omega$-limit set of the solution…

偏微分方程分析 · 数学 2021-04-21 Evangelos Latos , Takashi Suzuki

A method to derive the corrections for the dispersion of the reaction plane at intermediate energies is proposed. The method is based on the correlated, non-isotropic Gaussian approximation. It allowed to construct the excitation function…

核实验 · 物理学 2007-05-23 J. Lukasik , W. Trautmann

Pebble-bed nuclear reactor technology, which is currently being revived around the world, raises fundamental questions about dense granular flow in silos. A typical reactor core is composed of graphite fuel pebbles, which drain very slowly…

软凝聚态物质 · 物理学 2009-11-11 Chris H. Rycroft , Gary S. Grest , James W. Landry , Martin Z. Bazant

Phase transitions of reaction-diffusion systems with site occupation restriction and with particle creation that requires n>1 parents and where explicit diffusion of single particles (A) exists are reviewed. Arguments based on mean-field…

统计力学 · 物理学 2015-06-24 Geza Odor

Multispecies reaction-diffusion systems, for which the time evolution equation of correlation functions become a closed set, are considered. A formal solution for the average densities is found. Some special interactions and the exact time…

凝聚态物理 · 物理学 2012-01-27 A. Aghamohammadi , A. H. Fatollahi , M. Khorrami , A. Shariati

We consider the finite volume approximation of a reaction-diffusion system with fast reversible reaction. We deduce from a priori estimates that the approximate solution converges to the weak solution of the reaction-diffusion problem and…

偏微分方程分析 · 数学 2008-08-05 R. Eymard , D. Hilhorst , M. Olech