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Biological systems, unlike physical or chemical systems, are characterized by the very inhomogeneous distribution of their components. The immune system, in particular, is notable for self-organizing its structure. Classically, the dynamics…

统计力学 · 物理学 2007-05-23 Yoram Louzoun , Sorin Solomon , Henri Atlan , Irun R. Cohen

Many systems in chemistry, biology, finance and social sciences present emerging features which are not easy to guess from the elementary interactions of their microscopic individual components. In the past, the macroscopic behavior of such…

adap-org · 物理学 2009-10-31 Nadav M. Shnerb , Yoram Louzoun , Eldad Bettelheim , Sorin Solomon

The observed general time-asymmetric behavior of macroscopic systems -- embodied in the second law of thermodynamics -- arises naturally from time-symmetric microscopic laws due to the great disparity between macro and micro-scales. More…

凝聚态物理 · 物理学 2007-05-23 Joel L. Lebowitz

Dynamical systems theory provides powerful methods to extract effective macroscopic dynamics from complex systems with slow modes and fast modes. Here we derive and theoretically support a macroscopic, spatially discrete, model for a class…

偏微分方程分析 · 数学 2010-03-12 Wei Wang , A. J. Roberts

Animal groups exhibit emergent properties that are a consequence of local interactions. Linking individual-level behaviour to coarse-grained descriptions of animal groups has been a question of fundamental interest. Here, we present two…

种群与进化 · 定量生物学 2019-02-21 Jitesh Jhawar , Richard G. Morris , Vishwesha Guttal

We derive a class of macroscopic differential equations that describe collective adaptation, starting from a discrete-time stochastic microscopic model. The behavior of each agent is a dynamic balance between adaptation that locally…

适应与自组织系统 · 物理学 2024-05-15 Yuzuru Sato , Eizo Akiyama , James P. Crutchfield

We present experiments on the collective dynamics of macroscopic photoactive self-propelled particles subjected to spatiotemporally varying excitation. The particles move within an arena divided into two regions with different illumination…

软凝聚态物质 · 物理学 2026-03-19 Sára Lévay , Axel Katona , Raúl Cruz Hidalgo , Iker Zuriguel

We present here a system of self-propelled particles that follow a very simple motion law in continuous space in a deterministic and asynchronous way. This system of particles is capable of producing, depending on the particle density in…

斑图形成与孤子 · 物理学 2015-12-17 Thomas Schmickl , Martin Stefanec

How does immune system evolve functional proteins - potent antibodies - in such a short time? We address this question using a microscopic, protein-level, sequence-based model of humoral immune response with explicitly defined interactions…

细胞行为 · 定量生物学 2008-05-27 Muyoung Heo , Konstantin B. Zeldovich , Eugene I. Shakhnovich

We study the dynamics of proliferating cell collectives whose microscopic constituents' growth is inhibited by macroscopic growth-induced stress. Discrete particle simulations of a growing collective show the emergence of concentric-ring…

生物物理 · 物理学 2024-05-17 Scott Weady , Bryce Palmer , Adam Lamson , Taeyoon Kim , Reza Farhadifar , Michael J. Shelley

Models and simulations of collective behaviours are often based on considering them as assumed by interactive particle systems. The focus is then on behavioural and interaction rules by using approaches based on artificial agents designed…

适应与自组织系统 · 物理学 2009-03-04 Gianfranco Minati

The physical interpretation of the functioning of the adaptive immune system, which has been thoroughly characterized on genetic and molecular levels, provides a unique opportunity to define an adaptive self-organizing biological system in…

分子网络 · 定量生物学 2023-05-19 Jozsef Prechl

Many complex adaptive systems contain a large diversity of specialized components. The specialization at the level of the microscopic degrees of freedom, and diversity at the level of the system as a whole are phenomena that appear during…

adap-org · 物理学 2007-05-23 Vivek S. Borkar , Sanjay Jain , Govindan Rangarajan

In recent years the functionality of synthetic active microparticles has edged even closer to that of their biological counterparts. However, we still lack the understanding needed to recreate at the microscale key features of autonomous…

软凝聚态物质 · 物理学 2024-10-28 Philipp W. A. Schönhöfer , Sharon C. Glotzer

We introduce and discuss a kinetic framework describing the time evolution of the statistical distributions of a population divided into the compartments of susceptible, infectious, recovered, and resistant in the presence of a microbial…

种群与进化 · 定量生物学 2026-05-07 Marco Menale , Giuseppe Toscani , Mattia Zanella

Developments in dynamical systems theory provides new support for the macroscale modelling of pdes and other microscale systems such as Lattice Boltzmann, Monte Carlo or Molecular Dynamics simulators. By systematically resolving subgrid…

数值分析 · 数学 2012-01-18 A. J. Roberts , Tony MacKenzie , J. E. Bunder

Adaptive humoral immunity, from the physical perspective, can be regarded as the self-organization of the binding energy landscape of antibodies. In biological terms, the humoral immune system evolves and adapts its repertoire of antigen…

其他定量生物学 · 定量生物学 2025-09-15 Jozsef Prechl

Many complex systems are representable as macroscopic set of elements which interact by simple rules. The complex macroscopically relevant phenomena are then the result of the generic emergence of a space-time multi-scale dynamics. Critical…

高能物理 - 格点 · 物理学 2016-11-03 Sorin Solomon

Proteins are regularly described with some general indices (mass fractal dimension, surface fractal dimension, entropy, enthalpy, free energies, hydrophobicity, denaturation temperature etc..), which are inherently statistical in nature.…

生物大分子 · 定量生物学 2009-07-02 Anirban Banerji , Indira Ghosh

The origin of macroscopic complexity is traced in a wide range of systems (imunology, ecology, finance, marketing, etc) to the discrete and auto-catalytic (i.e. multiplicative) character of their elementary components. Even in the simplest…

统计力学 · 物理学 2007-05-23 Sorin Solomon
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