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Extreme mutation rates in microbes and cancer cells can result in error-induced extinction (EEX), where every descendant cell eventually acquires a lethal mutation. In this work, we investigate critical birth-death processes with $n$…

种群与进化 · 定量生物学 2024-07-08 Meritxell Brunet Guasch , P. L. Krapivsky , Tibor Antal

Multispecies ecosystems modelled by generalized Lotka-Volterra equations exhibit stationary population abundances, where large number of species often coexist. Understanding the precise conditions under which this is at all feasible and…

种群与进化 · 定量生物学 2026-05-19 Philippe Jacquod

In this work we construct individual-based models that give rise to the generalized logistic model at the mean-field deterministic level and that allow us to interpret the parameters of these models in terms of individual interactions. We…

种群与进化 · 定量生物学 2017-09-13 Vicenc Mendez , Michael Assaf , Werner Horsthemke , Daniel Campos

The extinction of species is a major problem of concern with a large literature. Our investigation gives insight into when species extinctions must occur, with an emphasis on determining which species might possibly die out and on how fast…

动力系统 · 数学 2023-05-10 Naghmeh Akhavan , James A. Yorke

We study the evolution of gene frequencies in a population living in $\mathbb{R}^d$, modelled by the spatial Lambda Fleming-Viot process with natural selection (Barton, Etheridge and Veber, 2010 and Etheridge, Veber and Yu, 2014). We…

概率论 · 数学 2022-10-04 Raphaël Forien , Sarah Penington

We develop a theory of first passage processes in stochastic non-equilibrium systems of birth-death type using two closely related epidemiological models as examples. Our method employs the probability generating function technique in…

统计力学 · 物理学 2014-08-06 Alex Kamenev , Baruch Meerson

We consider a class of continuous-time stochastic growth models on $d$-dimensional lattice with non-negative real numbers as possible values per site. The class contains examples such as binary contact path process and potlatch process. We…

概率论 · 数学 2009-07-27 Yukio Nagahata , Nobuo Yoshida

Many species live in colonies that thrive for a while and then collapse. Upon collapse very few individuals survive. The survivors start new colonies at other sites that thrive until they collapse, and so on. We introduce spatial and…

We consider a continuous-time symmetric branching random walk on the $d$-dimensional lattice, $d\ge 1$, and assume that at the initial moment there is one particle at every lattice point. Moreover, we assume that the underlying random walk…

概率论 · 数学 2019-03-07 Daria Balashova , Stanislav Molchanov , Elena Yarovaya

In the long run, the eventual extinction of any biological population is an inevitable outcome. While extensive research has focused on the average time it takes for a population to go extinct under various circumstances, there has been…

种群与进化 · 定量生物学 2023-07-18 David Kessler , Nadav M. Shnerb

Many biological systems exhibit multiscale dynamics, where some species occur in high copy numbers while others remain rare. This heterogeneity necessitates hybrid modelling approaches: deterministic models are computationally efficient but…

种群与进化 · 定量生物学 2026-01-21 Tom Kimpson , Domenic P. J. Germano , Jennifer A. Flegg , Mark B. Flegg

Chase-Escape is a simple stochastic model that describes a predator-prey interaction. In this model, there are two types of particles, red and blue. Red particles colonize adjacent empty sites at an exponential rate $\lambda_{R}$, whereas…

无序系统与神经网络 · 物理学 2018-07-24 Si Tang , George Kordzakhia , Steven P. Lalley

The statistical properties of an ecosystem composed of species interacting via pairwise, random interactions and deterministic, concentration limiting self-interaction are studied analytically with tools of equilibrium statistical mechanics…

无序系统与神经网络 · 物理学 2009-11-07 Viviane M. de Oliveira , J. F. Fontanari

A class of models for large-scale evolution and mass extinctions is presented. These models incorporate environmental changes on all scales, from influences on a single species to global effects. This is a step towards a unified picture of…

adap-org · 物理学 2007-05-23 C. Wilke , S. Altmeyer , T. Martinetz

Stochastic discrete-time SIS and SIR models of endemic diseases are introduced and analyzed. For the deterministic, mean-field model, the basic reproductive number $R_0$ determines their global dynamics. If $R_0\le 1$, then the frequency of…

种群与进化 · 定量生物学 2020-05-19 Sebastian J. Schreiber , Shuo Huang , Jifa Jiang , Hao Wang

We study a lattice model of a multi-species prey-predator system. Numerical results show that for a small mutation rate the model develops irregular long-period oscillatory behavior with sizeable changes in a number of species. The…

其他凝聚态物理 · 物理学 2009-11-10 Adam Lipowski

We study the interplay between synchronization and extinction of a species. Using a general model we show that under a common external forcing, the species with a quadratic saturation term in the population dynamics first undergoes spatial…

混沌动力学 · 物理学 2009-11-11 R. E. Amritkar , Govindan Rangarajan

We consider a stochastic model for a pathogen population in the presence of an immune response, in which pathogen types are partially ordered by ancestry and the immune system must eliminate ancestor types before it can eliminate their…

概率论 · 数学 2026-02-03 Carolina Grejo , Fabio Lopes , Fábio Machado , Alejandro Roldán-Correa

We consider branching random walks in $d$-dimensional integer lattice with time-space i.i.d. offspring distributions. This model is known to exhibit a phase transition: If $d \ge 3$ and the environment is "not too random", then, the total…

概率论 · 数学 2007-12-06 Yueyun Hu , Nobuo Yoshida

We analyse a stochastic SIS epidemic amongst a finite population partitioned into households. Since the population is finite, the epidemic will eventually go extinct, i.e., have no more infectives in the population. We study the effects of…

种群与进化 · 定量生物学 2009-08-05 Tom Britton , Peter Neal