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We present an analytically solvable model for self-assembly of a molecular complex on a filament. The process is driven by a seed molecule that undergoes facilitated diffusion, which is a search strategy that combines diffusion in…

统计力学 · 物理学 2015-11-04 Ziya Kalay

We propose a mathematical model of DNA self-assembly using 2D tiles to form 3D nanostructures. This is the first work to combine studies in self-assembly and nanotechnology in 3D, just as Rothemund and Winfree did in the 2D case. Our model…

计算复杂性 · 计算机科学 2007-05-23 Ming-Yang Kao , Vijay Ramachandran

A coarse-grained computational model is used to investigate the effect of a fluctuating fluid membrane on the dynamics of patchy-particle assembly into virus capsid-like cores. Results from simulations for a broad range of parameters are…

软凝聚态物质 · 物理学 2014-11-18 Richard Matthews , Christos N. Likos

We adapt Vertex models to understand the physical origin of the formation of long-range ordered structures in repulsive soft particles. The model incorporates contributions from the volume and surface area of each particle. Sampling using…

软凝聚态物质 · 物理学 2022-06-28 Toluwanimi O. Bello , Sangwoo Lee , Patrick T. Underhill

In this paper, we investigate the abilities of systems of self-assembling tiles which can each pass a constant number of signals to their immediate neighbors to create replicas of input shapes. Namely, we work within the Signal-passing Tile…

新兴技术 · 计算机科学 2022-04-05 Andrew Alseth , Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

Finding affordable ways of generating high-density ordered nanostructures that can be transferred to a substrate is a major challenge for industrial applications like memories or optical devices with high resolution features. In this work,…

We consider the self-assembly of composite structures from a group of nanocomponents, each consisting of particles within an $N$-atom system. Self-assembly pathways and rates for nanocomposites are derived via a multiscale analysis of the…

生物物理 · 物理学 2014-01-06 Stephen Pankavich , Peter Ortoleva

The assembly of nanometer-sized building blocks into complex morphologies is not only of fundamental interest but also plays a key role in material science and nanotechnology. We show that the shape of self-assembled superstructures formed…

软凝聚态物质 · 物理学 2020-05-08 Baeckkyoung Sung , Rik Wensink , Eric Grelet

This paper is about partitioning in parallel and distributed simulation. That means decomposing the simulation model into a numberof components and to properly allocate them on the execution units. An adaptive solution based on…

分布式、并行与集群计算 · 计算机科学 2016-11-07 Gabriele D'Angelo

Understanding the complexity of fragmentation processes is essential for regulating intercellular communication in mechanistic biology and developing novel bottom-up approaches in a large range of multiphase flow processes. In this context,…

介观与纳米尺度物理 · 物理学 2019-05-09 François Sicard , Jhoan Toro-Mendoza , Alberto Striolo

Topologically-engineered mechanical frames are important model constructs for architecture, machine mechanisms, and metamaterials. Despite significant advances in macroscopically fashioned frames, realization and phonon imaging of…

材料科学 · 物理学 2024-03-26 Chang Qian , Ethan Stanifer , Zhan Ma , Binbin Luo , Chang Liu , Lehan Yao , Wenxiao Pan , Xiaoming Mao , Qian Chen

We perform numerical simulations to study self-assembly of nanoparticles mediated by an elastic planar surface. We show how the nontrivial elastic response to deformations of these surfaces leads to anisotropic interactions between the…

软凝聚态物质 · 物理学 2012-01-04 Andela Šarić , Angelo Cacciuto

Self-assemblies, structured via nanoparticles, show promise as materials for advanced applications, like photonic devices, electrochemical energy storage units and catalysis support. Despite observing diverse morphologies, a comprehensive…

In this paper, we introduce a method to rapidly create 3D geometries by folding 2D sheets via pull-up nets. Given a 3D structure, we unfold its mesh into a planar 2D sheet using heuristic algorithms and populate these with cutlines and…

人机交互 · 计算机科学 2022-12-21 Lauren Niu , Xinyi Yang , Martin Nisser , Stefanie Mueller

Reconstructing meshes from point clouds is a fundamental task in computer vision with applications spanning robotics, autonomous systems, and medical imaging. Selecting an appropriate learning-based method requires understanding trade-offs…

计算机视觉与模式识别 · 计算机科学 2026-01-06 Fatima Zahra Iguenfer , Achraf Hsain , Hiba Amissa , Yousra Chtouki

We present a method for generating high-quality watertight manifold meshes from multi-view input images. Existing volumetric rendering methods are robust in optimization but tend to generate noisy meshes with poor topology. Differentiable…

计算机视觉与模式识别 · 计算机科学 2025-01-20 Xinyue Wei , Fanbo Xiang , Sai Bi , Anpei Chen , Kalyan Sunkavalli , Zexiang Xu , Hao Su

The self-assembly mechanism of one-end-open carbon nanotubes (CNTs) suspended in an aqueous solution was studied by molecular dynamics simulations. It was shown that two one-end-open CNTs with different diameters can coaxially self-assemble…

介观与纳米尺度物理 · 物理学 2017-07-31 Hang Xiao , Xiaoyang Shi , Xi Chen

We study DNA self-assembly and DNA computation using a coarse-grained DNA model within the directional dynamic bonding framework {[}C. Svaneborg, Comp. Phys. Comm. 183, 1793 (2012){]}. In our model, a single nucleotide or domain is…

软凝聚态物质 · 物理学 2012-06-13 Carsten Svaneborg , Harold Fellermann , Steen Rasmussen

We propose a novel deep reinforcement learning-based approach for 3D object reconstruction from monocular images. Prior works that use mesh representations are template based. Thus, they are limited to the reconstruction of objects that…

计算机视觉与模式识别 · 计算机科学 2021-09-27 Tarek Ben Charrada , Hedi Tabia , Aladine Chetouani , Hamid Laga

Nanofibers are microstructured materials that span a broad range of applications from tissue engineering scaffolds to polymer transistors. An efficient method of nanofiber production is Rotary Jet-Spinning (RJS), consisting of a perforated…