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We consider strategies to organize easily updatable associative arrays in external memory. These arrays are used for full-text search. We study indexes with different keys: single word form, two word forms, and sequences of word forms. The…

信息检索 · 计算机科学 2020-07-21 Alexander B. Veretennikov

Data intensive applications on clusters often require requests quickly be sent to the node managing the desired data. In many applications, one must look through a sorted tree structure to determine the responsible node for accessing or…

分布式、并行与集群计算 · 计算机科学 2007-05-23 Xiaoqin Ma , Gene Cooperman

We give the first algorithm that maintains an approximate decision tree over an arbitrary sequence of insertions and deletions of labeled examples, with strong guarantees on the worst-case running time per update request. For instance, we…

数据结构与算法 · 计算机科学 2023-02-13 Marco Bressan , Mauro Sozio

We study the integration of machine learning advice to improve upon traditional data structure designed for efficient search queries. Although there has been recent effort in improving the performance of binary search trees using machine…

数据结构与算法 · 计算机科学 2025-03-10 Chunkai Fu , Brandon G. Nguyen , Jung Hoon Seo , Ryan Zesch , Samson Zhou

The decision tree recursively partitions the input space into regions and derives axis-aligned decision boundaries from data. Despite its simplicity and interpretability, decision trees lack parameterized representation, which makes it…

机器学习 · 计算机科学 2024-11-19 Jinxiong Zhang

A distributed heap storage manager has been implemented on the Fujitsu AP1000 multicomputer. The performance of various pre-fetching strategies is experimentally compared. Subjective programming benefits and objective performance benefits…

分布式、并行与集群计算 · 计算机科学 2007-05-23 Lex Weaver , Chris Johnson

The Persistent-Phylogeny Model is an extension of the widely studied Perfect-Phylogeny Model, encompassing a broader range of evolutionary phenomena. Biological and algorithmic questions concerning persistent phylogeny have been intensely…

种群与进化 · 定量生物学 2015-06-03 Dan Gusfield

The suffix tree is a data structure for indexing strings. It is used in a variety of applications such as bioinformatics, time series analysis, clustering, text editing and data compression. However, when the string and the resulting suffix…

数据库 · 计算机科学 2011-10-03 Essam Mansour , Amin Allam , Spiros Skiadopoulos , Panos Kalnis

Bayesian optimization (BO) is a sample-efficient global optimization algorithm for black-box functions which are expensive to evaluate. Existing literature on model based optimization in conditional parameter spaces are usually built on…

机器学习 · 统计学 2020-10-08 Xingchen Ma , Matthew B. Blaschko

Tree data structures, such as red-black trees, quad trees, treaps, or tries, are fundamental tools in computer science. A classical problem in concurrency is to obtain expressive, efficient, and scalable versions of practical tree data…

数据库 · 计算机科学 2023-10-10 Ilya Kokorin , Dan Alistarh , Vitaly Aksenov

Recently proposed budding tree is a decision tree algorithm in which every node is part internal node and part leaf. This allows representing every decision tree in a continuous parameter space, and therefore a budding tree can be jointly…

机器学习 · 计算机科学 2014-12-22 Ozan İrsoy , Ethem Alpaydın

The demand for high-density data storage with ultrafast accessibility motivates the search for new memory implementations. Ideally such storage devices should be robust to input error and to unreliability of individual elements; furthermore…

无序系统与神经网络 · 物理学 2007-05-23 P. Chandra , L. B. Ioffe

The dynamic trees problem is to maintain a forest subject to edge insertions and deletions while facilitating queries such as connectivity, path weights, and subtree weights. Dynamic trees are a fundamental building block of a large number…

数据结构与算法 · 计算机科学 2020-10-27 Umut A. Acar , Daniel Anderson , Guy E. Blelloch , Laxman Dhulipala , Sam Westrick

Suffix trees are one of the most versatile data structures in stringology, with many applications in bioinformatics. Their main drawback is their size, which can be tens of times larger than the input sequence. Much effort has been put into…

数据结构与算法 · 计算机科学 2017-12-18 Andrea Farruggia , Travis Gagie , Gonzalo Navarro , Simon J. Puglisi , Jouni Sirén

We present a decremental data structure for maintaining the SPQR-tree of a planar graph subject to edge contractions and deletions. The update time, amortized over $\Omega(n)$ operations, is $O(\log^2 n)$. Via SPQR-trees, we give a…

数据结构与算法 · 计算机科学 2018-06-29 Jacob Holm , Giuseppe F. Italiano , Adam Karczmarz , Jakub Łącki , Eva Rotenberg

We present a general transformation for combining a constant number of binary search tree data structures (BSTs) into a single BST whose running time is within a constant factor of the minimum of any "well-behaved" bound on the running time…

数据结构与算法 · 计算机科学 2013-04-30 Erik D. Demaine , John Iacono , Stefan Langerman , Özgür Özkan

This work unifies insights from the systems and functional programming communities, in order to enable compositional reasoning about software which is nonetheless efficiently realizable in hardware. It exploits a correspondence between…

分布式、并行与集群计算 · 计算机科学 2020-03-18 Thomas Dickerson

Suffix trees are a fundamental data structure in stringology, but their space usage, though linear, is an important problem for its applications. We design and implement a new compressed suffix tree targeted to highly repetitive texts, such…

数据结构与算法 · 计算机科学 2019-02-12 Manuel Cáceres , Gonzalo Navarro

Let S be a finite, ordered alphabet, and let x = x_1 x_2 ... x_n be a string over S. A "secondary index" for x answers alphabet range queries of the form: Given a range [a_l,a_r] over S, return the set I_{[a_l;a_r]} = {i |x_i \in [a_l;…

数据库 · 计算机科学 2008-11-19 Rasmus Pagh , S. Srinivasa Rao

In data analysis, latent variables play a central role because they help provide powerful insights into a wide variety of phenomena, ranging from biological to human sciences. The latent tree model, a particular type of probabilistic…

机器学习 · 计算机科学 2014-02-05 Raphaël Mourad , Christine Sinoquet , Nevin L. Zhang , Tengfei Liu , Philippe Leray