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String matching is one of the most fundamental problems in computer science. A natural problem is to determine the number of characters that need to be queried (i.e. the decision tree complexity) in a string in order to decide whether this…

We report (to our knowledge) the first evaluation of Constraint Satisfaction as a computational framework for solving closest string problems. We show that careful consideration of symbol occurrences can provide search heuristics that…

Let $w$ be a string of length $n$. The problem of counting factors crossing a position - Problem 64 from the textbook ``125 Problems in Text Algorithms'' [Crochemore, Leqroc, and Rytter, 2021], asks to count the number $\mathcal{C}(w,k)$…

The k-Clique problem is a canonical hard problem in parameterized complexity. In this paper, we study the parameterized complexity of approximating the k-Clique problem where an integer k and a graph G on n vertices are given as input, and…

In the longest common substring problem, we are given two strings of length $n$ and must find a substring of maximal length that occurs in both strings. It is well known that the problem can be solved in linear time, but the solution is not…

The NP-hard Metric Dimension problem is to decide for a given graph G and a positive integer k whether there is a vertex subset of size at most k that separates all vertex pairs in G. Herein, a vertex v separates a pair {u,w} if the…

A weighted string, also known as a position weight matrix, is a sequence of probability distributions over some alphabet. We revisit the Weighted Shortest Common Supersequence (WSCS) problem, introduced by Amir et al. [SPIRE 2011], that is,…

Let us call a sequence of numbers heapable if they can be sequentially inserted to form a binary tree with the heap property, where each insertion subsequent to the first occurs at a leaf of the tree, i.e. below a previously placed number.…

We study the problems of finding a shortest synchronizing word and its length for a given prefix code. This is done in two different settings: when the code is defined by an arbitrary decoder recognizing its star and when the code is…

Strings form a fundamental data type in computer systems. String searching has been extensively studied since the inception of computer science. Increasingly many applications have to deal with imprecise strings or strings with fuzzy…

A heapable sequence is a sequence of numbers that can be arranged in a "min-heap data structure". Finding a longest heapable subsequence of a given sequence was proposed by Byers, Heeringa, Mitzenmacher, and Zervas (ANALCO 2011) as a…

We revisit classic string problems considered in the area of parameterized complexity, and study them through the lens of dynamic data structures. That is, instead of asking for a static algorithm that solves the given instance efficiently,…

We study the maximization version of the fundamental graph coloring problem. Here the goal is to color the vertices of a k-colorable graph with k colors so that a maximum fraction of edges are properly colored (i.e. their endpoints receive…

We consider the approximate pattern matching problem under edit distance. In this problem we are given a pattern $P$ of length $w$ and a text $T$ of length $n$ over some alphabet $\Sigma$, and a positive integer $k$. The goal is to find all…

Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)-space and almost always runs in $O(k.n)$-time where n is the length of the string and k is the…

The existence of string functions, which are not polynomial time computable, but whose graph is checkable in polynomial time, is a basic assumption in cryptography. We prove that in the framework of algebraic complexity, there are no such…

The approximate string matching is a fundamental and recurrent problem that arises in most computer science fields. This problem can be defined as follows: Let $D=\{x_1,x_2,\ldots x_d\}$ be a set of $d$ words defined on an alphabet…

In this paper, we consider a generalized longest common subsequence problem with multiple substring exclusion constrains. For the two input sequences $X$ and $Y$ of lengths $n$ and $m$, and a set of $d$ constrains $P=\{P_1,...,P_d\}$ of…

We consider problems where the input is a set of points in the plane and an integer $k$, and the task is to find a subset $S$ of the input points of size $k$ such that $S$ satisfies some property. We focus on properties that depend only on…

We study the parameterized complexity of the problems of finding a maximum common (induced) subgraph of two given graphs. Since these problems generalize several NP-complete problems, they are intractable even when parameterized by strongly…