相关论文: Parameterized Intractability of Motif Search Probl…

We study the classical approximate string matching problem, that is, given strings $P$ and $Q$ and an error threshold $k$, find all ending positions of substrings of $Q$ whose edit distance to $P$ is at most $k$. Let $P$ and $Q$ have…

We study the synthesis problem for systems with a parameterized number of processes. As in the classical case due to Church, the system selects actions depending on the program run so far, with the aim of fulfilling a given specification.…

We show that approximating the trace norm contraction coefficient of a quantum channel within a constant factor is NP-hard. Equivalently, this shows that determining the optimal success probability for encoding a bit in a quantum system…

The size $b$ of the smallest bidirectional macro scheme, which is arguably the most general copy-paste scheme to generate a given sequence, is considered to be the strictest reachable measure of repetitiveness. It is strictly lower-bounded…

In the beautifully simple-to-state problem of trace reconstruction, the goal is to reconstruct an unknown binary string $x$ given random "traces" of $x$ where each trace is generated by deleting each coordinate of $x$ independently with…

We relate the computational complexity of finite strings to universal representations of their underlying symmetries. First, Boolean functions are classified using the universal covering topologies of the circuits which enumerate them. A…

A pattern $\alpha$ is a string of variables and terminal letters. We say that $\alpha$ matches a word $w$, consisting only of terminal letters, if $w$ can be obtained by replacing the variables of $\alpha$ by terminal words. The matching…

We consider the $k$-Clustering problem, which is for a given multiset of $n$ vectors $X\subset \mathbb{Z}^d$ and a nonnegative number $D$, to decide whether $X$ can be partitioned into $k$ clusters $C_1, \dots, C_k$ such that the cost…

The dichotomy conjecture for the parameterized embedding problem states that the problem of deciding whether a given graph $G$ from some class $K$ of "pattern graphs" can be embedded into a given graph $H$ (that is, is isomorphic to a…

We prove that for an arbitrarily small constant $\eps>0,$ assuming NP$\not \subseteq$DTIME$(2^{{\log^{O(1/\eps)} n}})$, the preprocessing versions of the closest vector problem and the nearest codeword problem are hard to approximate within…

We study the Densest At-Least-$k$-Subgraph (DAL$k$S) problem, in which we are given an undirected graph $G$ and an integer $k$, and the goal is to find a subgraph of $G$ with at least $k$ vertices with maximum density. The best-known…

In Defective Coloring we are given a graph $G = (V, E)$ and two integers $\chi_d, \Delta^*$ and are asked if we can partition $V$ into $\chi_d$ color classes, so that each class induces a graph of maximum degree $\Delta^*$. We investigate…

We study the complexity of constructing an optimal parsing $\varphi$ of a string ${\bf s} = s_1 \dots s_n$ under the constraint that given a position $p$ in the original text, and the LZ76-like (Lempel Ziv 76) encoding of $T$ based on…

We introduce a family of graph parameters, called induced multipartite graph parameters, and study their computational complexity. First, we consider the following decision problem: an instance is an induced multipartite graph parameter $p$…

The closest string problem is an NP-hard problem, whose task is to find a string that minimizes maximum Hamming distance to a given set of strings. This can be reduced to an integer program (IP). However, to date, there exists no known…

The longest common subsequence (LCS) is a fundamental problem in string processing which has numerous algorithmic studies, extensions, and applications. A sequence $u_1, \ldots, u_f$ of $f$ strings s said to be an ($f$-)segmentation of a…

Many problems in static program analysis can be modeled as the context-free language (CFL) reachability problem on directed labeled graphs. The CFL reachability problem can be generally solved in time $O(n^3)$, where $n$ is the number of…

We study quantum algorithms for several fundamental string problems, including Longest Common Substring, Lexicographically Minimal String Rotation, and Longest Square Substring. These problems have been widely studied in the stringology…

A graph on $n$ vertices is equitably $k$-colorable if it is $k$-colorable and every color is used either $\left\lfloor n/k \right\rfloor$ or $\left\lceil n/k \right\rceil$ times. Such a problem appears to be considerably harder than vertex…

We study here the so called subsequence pattern matching also known as hidden pattern matching in which one searches for a given pattern $w$ of length $m$ as a subsequence in a random text of length $n$. The quantity of interest is the…