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A method to reconstruct the energy landscape of small peptides is presented with reference to a 2d off--lattice model. The starting point is a statistical analysis of the configurational distances between generic minima and directly…

软凝聚态物质 · 物理学 2007-05-23 Lorenzo Bongini , Roberto Livi , Antonio Politi , Alessandro Torcini

Driven suspensions, where energy is input at a particle scale, are a framework for understanding general principles of out-of-equilibrium organization. A large number of simple interacting units can give rise to non-trivial structure and…

软凝聚态物质 · 物理学 2026-01-23 Pamud Akalanka Bethmage , Ryker Fish , Brennan Sprinkle , Michelle M. Driscoll

We study heterogeneities in a binary Lennard-Jones system below the glass transition using molecular dynamics simulations. We identify mobile and immobile particles and measure their distribution of vibrational amplitudes. For temperatures…

无序系统与神经网络 · 物理学 2013-05-29 Katharina Vollmayr-Lee , Annette Zippelius

We consider the influence of the Fermi statistics of nucleons on the binding energy of a new type of nuclear structures such as fractal nuclear clusters (fractal isomers of nuclei). It is shown that the fractal nuclear isomers possess a…

综合物理 · 物理学 2013-07-19 S. Adamenko , V. Bolotov , V. Novikov

We present an experimental study on the collective behavior of macroscopic self-propelled particles that are externally excited by light. This property allows testing the system response to the excitation intensity in a very versatile…

软凝聚态物质 · 物理学 2025-09-03 Sára Lévay , Axel Katona , Hartmut Löwen , Raúl Cruz Hidalgo , Iker Zuriguel

Two-dimensional classical cluster of particles interacting through a screened Coulomb potential is studied. This system can be used as a model for "dusty particles" in high-frequency discharge plasma. For systems consisting of N = 2 - 40…

介观与纳米尺度物理 · 物理学 2009-10-31 G. E. Astrakharchik , A. I. Belousov , Yu. E. Lozovik

The stochastic scenario of relaxation in the complex systems is presented. It is based on a general probabilistic formalism of limit theorems. The nonexponential relaxation is shown to result from the asymptotic self-similar properties in…

统计力学 · 物理学 2011-11-15 Aleksander Stanislavsky

Most of the current understanding of structure-property relations at the molecular and the supramolecular scales can be formulated in terms of the stability of and the interactions between a limited number of recurring structural motifs…

化学物理 · 物理学 2018-01-29 Piero Gasparotto , Robert Horst Meißner , Michele Ceriotti

We review a class of energy landscape analysis method that uses the Ising model and takes multivariate time series data as input. The method allows one to capture dynamics of the data as trajectories of a ball from one basin to a different…

无序系统与神经网络 · 物理学 2025-05-13 Naoki Masuda , Saiful Islam , Si Thu Aung , Takamitsu Watanabe

A recently introduced analytical model for the nuclear density profile[1] is implemented in the Extended Thomas-Fermi (ETF) energy density functional. This allows to (i) shed a new light on the issue of the sign of surface symmetry energy…

核理论 · 物理学 2014-07-10 Francois Aymard , Francesca Gulminelli , Jérôme Margueron

This thesis is an attempt to provide a new outlook on complex systems, as well as some physical answers for certain models, taking a computational approach. We have focused on disordered systems, addressing two traditional problems in three…

无序系统与神经网络 · 物理学 2011-11-02 D. Yllanes

We investigate the dynamics of a binary mixture Lennard-Jones system of different system sizes with respect to the importance of the properties of the underlying potential energy landscape (PEL). We show that the dynamics of small systems…

统计力学 · 物理学 2013-05-30 Christian Rehwald , Andreas Heuer

We present the Multi-Particle-Collision (MPC) dynamics approach to simulate properties of low-dimensional systems. In particular, we illustrate the method for a simple model: a one-dimensional gas of point particles interacting through…

Via computer simulations we study kinetics of pattern formation in a two-dimensional active matter system. Self-propulsion in our model is incorporated via the Vicsek-like activity, i.e., particles have the tendency of aligning their…

软凝聚态物质 · 物理学 2020-08-26 Saikat Chakraborty , Subir K. Das

We present a three-dimensional lattice-gas model with trivial thermodynamics, but nontrivial dynamics. The model is characterized by each particle having its own random energy landscape. The equilibrium dynamics of the model were…

软凝聚态物质 · 物理学 2012-03-27 Ulf R. Pedersen , Tina Hecksher , Jeppe C. Dyre , Thomas B. Schrøder

Energy landscapes are high-dimensional surfaces representing the dependence of system energy on variable configurations, which determine crucially the system's emergent behavior but are difficult to be analyzed due to their high-dimensional…

无序系统与神经网络 · 物理学 2024-05-24 Ho Fai Po , Chi Ho Yeung

We study the structure of inactive states in a prototypical model glass, the Kob-Andersen binary Lennard-Jones mixture. These inactive states are obtained by transition path sampling and are at dynamical phase coexistence with an active…

统计力学 · 物理学 2016-07-18 Daniele Coslovich , Robert L. Jack

By using projection superoperators, we present a new derivation of the quantum master equation first obtained by the Authors in Phys. Rev. E {\bf 68}, 066112 (2003). We show that this equation describes the dynamics of a subsystem weakly…

统计力学 · 物理学 2010-03-01 Massimiliano Esposito , Pierre Gaspard

Metastable states in Ising spin-glass models are studied by finding iterative solutions of mean-field equations for the local magnetizations. Two different equations are studied: the TAP equations which are exact for the SK model, and the…

无序系统与神经网络 · 物理学 2009-11-11 T. Aspelmeier , R. A. Blythe , A. J. Bray , M. A. Moore

The dissipative and decoherence properties of the two-level atom interacting with the squeezed vacuum field reservoir are investigated based on the nonautonomous master equation of the atomic density matrix in the framework of algebraic…

量子物理 · 物理学 2009-11-11 Jun-Hong An , Shun-Jin Wang , Hong-Gang Luo , Cheng-Long Jia