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Theoretical physicists have been fascinated by the phenomena of life for more than a century. As we engage with more realistic descriptions of living systems, however, things get complicated. After reviewing different reactions to this…

生物物理 · 物理学 2024-08-14 William Bialek

We study Bayesian automated mechanism design in unstructured dynamic environments, where a principal repeatedly interacts with an agent, and takes actions based on the strategic agent's report of the current state of the world. Both the…

计算机科学与博弈论 · 计算机科学 2021-05-14 Hanrui Zhang , Vincent Conitzer

We propose a method for approximating solutions to optimization problems involving the global stability properties of parameter-dependent continuous-time autonomous dynamical systems. The method relies on an approximation of the…

最优化与控制 · 数学 2013-08-12 Péter Koltai , Alexander Volf

There does not exist a general positive correlation between important life-supporting properties and the entropy production rate. The simple reason is that nondissipative and time-symmetric kinetic aspects are also relevant for establishing…

统计力学 · 物理学 2018-04-12 Marco Baiesi , Christian Maes

We develop an optimization framework centered around a core idea: once a (parametric) policy is specified, control authority is transferred to the policy, resulting in an autonomous dynamical system. Thus we should be able to optimize…

机器学习 · 计算机科学 2025-06-11 Emo Todorov

Time change is a powerful technique for generating noises and providing flexible models. In the framework of time changed Brownian and Poisson random measures we study the existence and uniqueness of a solution to a general mean-field…

概率论 · 数学 2016-08-23 Giulia Di Nunno , Hannes Haferkorn

Natural selection has shaped the evolution of cells and multi-cellular organisms such that social cooperation can often be preferred over an individualistic approach to metabolic regulation. This paper extends a framework for dynamic…

分子网络 · 定量生物学 2021-01-28 David S. Tourigny

The idea is advanced that self-organization in complex systems can be treated as decision making (as it is performed by humans) and, vice versa, decision making is nothing but a kind of self-organization in the decision maker nervous…

适应与自组织系统 · 物理学 2014-08-08 V. I. Yukalov , D. Sornette

We view Digital Ecosystems to be the digital counterparts of biological ecosystems. Here, we are concerned with the creation of these Digital Ecosystems, exploiting the self-organising properties of biological ecosystems to evolve…

网络与互联网体系结构 · 计算机科学 2011-12-02 Gerard Briscoe , Suzanne Sadedin , Philippe De Wilde

What determines biodiversity in nature is a prominent issue in ecology, especially in biotic resource systems that are typically devoid of cross-feeding. Here, we show that by incorporating pairwise encounters among consumer individuals…

种群与进化 · 定量生物学 2025-06-18 Ju Kang , Shijie Zhang , Yiyuan Niu , Xin Wang

We view Digital Ecosystems to be the digital counterparts of biological ecosystems, exploiting the self-organising properties of biological ecosystems, which are considered to be robust, self-organising and scalable architectures that can…

神经与进化计算 · 计算机科学 2009-10-05 G. Briscoe , P. De Wilde

Organisms are nonequilibrium, stationary systems self-organized via spontaneous symmetry breaking and undergoing metabolic cycles with broken detailed balance in the environment. The thermodynamic free-energy principle describes an…

神经元与认知 · 定量生物学 2022-11-24 Chang Sub Kim

The growth of world population, limitation of resources, economic problems and environmental issues force engineers to develop increasingly efficient solutions for logistic systems. Pure optimization for efficiency, however, has often led…

We study singular stochastic control of a two dimensional stochastic differential equation, where the first component is linear with random and unbounded coefficients. We derive existence of an optimal relaxed control and necessary…

最优化与控制 · 数学 2008-12-08 Daniel Andersson

The field of complex networks studies a wide variety of interacting systems by representing them as networks. To understand their properties and mutual relations, the randomisation of network connections is a commonly used tool. However,…

统计力学 · 物理学 2024-10-18 Noam Abadi , Franco Ruzzenenti

We show how to simulate numerically both the evolution of 1D quantum systems under dissipation as well as in thermal equilibrium. The method applies to both finite and inhomogeneous systems and it is based on two ideas: (a) a representation…

其他凝聚态物理 · 物理学 2007-05-23 F. Verstraete , J. J. Garcia-Ripoll , J. I. Cirac

Biological systems are typically highly open, non-equilibrium systems that are very challenging to understand from a statistical mechanics perspective. While statistical treatments of evolutionary biological systems have a long and rich…

Quantifying entropy production in various active matter phases will open new avenues for probing self-organization principles in these far-from-equilibrium systems. It has been hypothesized that the dissipation of free energy by active…

生物物理 · 物理学 2019-03-27 Carlos Floyd , Garegin A. Papoian , Christopher Jarzynski

Bayesian mechanics provides a framework that addresses dynamical systems that can be conceptualised as Bayesian inference. However, elucidating the requisite generative models is essential for empirical applications to realistic…

神经元与认知 · 定量生物学 2024-12-02 Takuya Isomura

The pervasive presence spatial and size structure in biological populations challenges fundamental assumptions at the heart of continuum models of population dynamics based on mean densities (local or global) only. Individual-based models…

种群与进化 · 定量生物学 2012-02-29 Michael Raghib , Nicholas A. Hill , Ulf Dieckmann