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We describe the simulation method of modelling the population evolution using Monte Carlo based on the Penna model. Individuals in the populations are represented by their diploid genomes. Genes expressed after the minimum reproduction age…

基因组学 · 定量生物学 2009-01-13 Agnieszka Laszkiewicz , Przemyslaw Biecek , Katarzyna Bonkowska , Stanislaw Cebrat

The sexual version of the Penna model of biological ageing, simulated since 1996, is compared here with alternative forms of reproduction as well as with models not involving ageing. In particular we want to check how sexual forms of life…

Computer simulations of the Penna ageing model suggest that already a small fraction of births with enhanced number of new mutations can negatively influence the whole population.

种群与进化 · 定量生物学 2015-05-13 S. Cebrat , D. Stauffer

The Penna model is a strategy to simulate the genetic dynamics of age-structured populations, in which the individuals genomes are represented by bit-strings. It provides a simple metaphor for the evolutionary process in terms of the…

种群与进化 · 定量生物学 2009-11-11 Veit Schwämmle , Suzana M. de Oliveira

We present a computer simulation, which is inspired by Penna model, to help understanding the effect of genetic coding tables on population dynamics. To represent populations we used real and artificial gene sequences in this model. We…

种群与进化 · 定量生物学 2007-07-16 E. Gultepe , M. L. Kurnaz

A deterministic model of an age-structured population with genetics analogous to the discrete time Penna model of genetic evolution is constructed on the basis of the Lotka-Volterra scheme. It is shown that if, as in the Penna model,…

种群与进化 · 定量生物学 2007-05-23 Miroslaw R. Dudek

We build upon our previous analytical results for the Penna model of senescence to include positive mutations. We investigate whether a small but non-zero positive mutation rate gives qualitatively different results to the traditional Penna…

种群与进化 · 定量生物学 2007-05-23 J. B. Coe , Y. Mao , M. E. Cates

In this paper the Penna model is reconsidered. With computer simulations we check how the control parameters of the model influence the size of the stable population.

种群与进化 · 定量生物学 2007-05-23 K. Malarz , M. Sitarz , P. Gronek , A. Dydejczyk

We present some results of simulations of population growth and evolution, using the standard asexual Penna model, with individuals characterized by a string of bits representing a genome containing some possible mutations. After about…

种群与进化 · 定量生物学 2009-11-11 Mikolaj Sitarz , Andrzej Z. Maksymowicz

The death of a biological population is an extreme event which we investigate here for a host-parasitoid system. Our simulations using the Penna ageing model show how biological evolution can ``teach'' the parasitoids to avoid extinction by…

种群与进化 · 定量生物学 2009-11-13 Dietrich Stauffer , Ana Proykova , Karl-Heinz Lampe

We have analysed the possibility of scaling the sexual Penna ageing model. Assuming that the number of genes expressed before the reproduction age grows linearly with the genome size and that the mutation rate per genome and generation is…

种群与进化 · 定量生物学 2007-05-23 A. Laszkiewicz , S. Cebrat , D. Stauffer

We have modified the sexual Penna model by introducing the fluctuating environment and fluctuations representing physiological functions of individuals. Additionally, we have introduced the mother care corresponding to the protection…

种群与进化 · 定量生物学 2008-11-04 Przemyslaw Biecek , Katarzyna Bonkowska , Stanislaw Cebrat

We represent a process of learning by using bit strings, where 1-bits represent the knowledge acquired by individuals. Two ways of learning are considered: individual learning by trial-and-error; and social learning by copying knowledge…

种群与进化 · 定量生物学 2007-05-23 Armando Ticona Bustillos , Paulo Murilo C. de Oliveira

We generalize the standard Penna bit-string model of biological ageing by assuming that each deleterious mutation diminishes the survival probability in every time interval by a small percentage. This effect is added to the usual lethal but…

统计力学 · 物理学 2015-06-24 J. S. Sá Martins , D. Stauffer

Modifying the Redfield model of sexual reproduction and the Penna model of biological aging, we compare reproduction with and without recombination in age-structured populations. In contrast to Redfield and in agreement with Bernardes we…

We present some analytic results for the steady states of the Penna model of sen escence, generalised to allow genetically identical individuals to die at differ ent ages via an arbitrary survival function. Modelling this with a Fermi…

软凝聚态物质 · 物理学 2009-11-07 J. B. Coe , Y. Mao , M. E. Cates

We study the population profile in a simple discrete time model of population dynamics. Our model, which is closely related to certain ``bit-string'' models of evolution, incorporates competition for resources via a population dependent…

统计力学 · 物理学 2009-10-31 Martin Howard , R. K. P. Zia

We investigate the scaling properties of the Penna model, which has become a popular tool for the study of population dynamics and evolutionary problems in recent years. We find that the model generates a normalised age distribution for…

种群与进化 · 定量生物学 2009-11-11 E. Brigatti , J. S. Sa' Martins , I. Roditi

The intensification and increased frequency of weather extremes is emerging as one of the most important aspects of climate change. We use Monte Carlo simulation to understand and predict the consequences of variations in trends (i.e.,…

种群与进化 · 定量生物学 2011-08-26 Simone Vincenzi , Michele Bellingeri

The probability of the survival of the population of individuals of both sexes of given mature age, procreation rate and structure stability has been searched in the numerical experiment. The populations with long period of reproduction and…

凝聚态物理 · 物理学 2007-05-23 Kazimierz Pater
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