相关论文: Solitons on H-bonds in proteins
This article offers a comprehensive survey of results obtained for solitons and complex nonlinear wave patterns supported by purely nonlinear lattices (NLs), which represent a spatially periodic modulation of the local strength and sign of…
We investigate the generation and propagation of solitary waves in the context of the Hertz chain and Toda lattice, with the aim to highlight the similarities, as well as differences between these systems. We begin by discussing the kinetic…
We address the properties of fully three-dimensional solitons in complex parity-time (PT)-symmetric periodic lattices with focusing Kerr nonlinearity, and uncover that such lattices can stabilize both, fundamental and vortex-carrying…
We propose an experimentally relevant scheme to create stable solitons in a three-dimensional Bose-Einstein condensate confined by a one-dimensional optical lattice, using temporal modulation of the scattering length (through ac magnetic…
An overview is given of basic models combining discreteness in their linear parts (i.e. the models are built as dynamical lattices) and nonlinearity acting at sites of the lattices or between the sites. The considered systems include the…
The existence of stable solitons in two- and three-dimensional (2D and 3D) media governed by the self-focusing cubic nonlinear Schr\"{o}dinger equation with a periodic potential is demonstrated by means of the variational approximation (VA)…
We consider the soliton solutions in 1- and (1+1)-dimensional Toda lattice models with a boundary. We make use of the solutions already known on a full line by means of the Hirota's method. We explicitly construct the solutions satisfying…
In a benchmark dynamical-lattice model in three dimensions, the discrete nonlinear Schr{\"{o}}dinger equation, we find discrete vortex solitons with various values of the topological charge $S$. Stability regions for the vortices with…
We present a class of solutions of the two-dimensional Toda lattice equation, its fully discrete analogue and its ultra-discrete limit. These solutions demonstrate the existence of soliton resonance and web-like structure in discrete…
Soliton dynamics in a large variety of longitudinally modulated lattices are studied in terms of phase space analysis for an effective particle approach and direct numerical simulations. Complex soliton dynamics are shown to depend strongly…
We investigate some aspects of the soliton dynamics in an alpha-helical protein macromolecule within the steric Davydov-Scott model. Our main objective is to elucidate the important role of the helical symmetry in the formation, stability…
We report on the existence and stability of multicolor lattice vortex solitons constituted by coupled fundamental frequency and second-harmonic waves in optical lattices in quadratic nonlinear media. It is shown that the solitons are stable…
The equilibrium states of one-dimensional proton conductors in the systems with hydrogen bonds are investigated. Our extended hard-core boson lattice model includes short-range interactions between hydrogen ions, their transfer along the…
This concise review aims to provide a summary of the most relevant recent experimental and theoretical results for solitons, i.e., self-trapped bound states of nonlinear waves, in two- and three-dimensional (2D and 3D) media. In comparison…
Solitons are self-sustained wavepackets that occur in many physical systems. Their recent demonstration in optical microresonators has provided a new platform for study of nonlinear optical physics with practical implications for…
It has been observed that certain classical chains admit topologically protected zero-energy modes that are localized on the boundaries. The static features of such localized modes are captured by linearized equations of motion, but the…
Davydov's model of solitons in alpha-helix protein chains is shown to display features of self-organized criticality (SOC), i.e., power law behaviour of correlations in space and 1/f-noise, as a consequence of considering random peptide…
Davydov's model of solitons in alpha-helix protein chains is shown to display features of self-organized criticality (SOC), i.e., power law behaviour of correlations in space and 1/f-noise, as a consequence of considering random peptide…
We propose that protein loops can be interpreted as topological domain-wall solitons. They interpolate between ground states that are the secondary structures like alpha-helices and beta-strands. Entire proteins can then be folded simply by…
Toroidal modes in the form of so-called Hopfions, with two independent winding numbers, a hidden one (twist, s), which characterizes a circular vortex thread embedded into a three-dimensional soliton, and the vorticity around the vertical…