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We have analysed the possibility of scaling the sexual Penna ageing model. Assuming that the number of genes expressed before the reproduction age grows linearly with the genome size and that the mutation rate per genome and generation is…

种群与进化 · 定量生物学 2007-05-23 A. Laszkiewicz , S. Cebrat , D. Stauffer

The Penna model is a model of evolutionary ageing through mutation accumulation where traditionally time and the age of an organism are treated as discrete variables and an organism's genome by a binary bit string. We reformulate the…

种群与进化 · 定量生物学 2007-05-23 J. B. Coe , Y. Mao

We generalize the standard Penna bit-string model of biological ageing by assuming that each deleterious mutation diminishes the survival probability in every time interval by a small percentage. This effect is added to the usual lethal but…

统计力学 · 物理学 2015-06-24 J. S. Sá Martins , D. Stauffer

The sexual version of the Penna model of biological ageing, simulated since 1996, is compared here with alternative forms of reproduction as well as with models not involving ageing. In particular we want to check how sexual forms of life…

We investigate the scaling properties of the Penna model, which has become a popular tool for the study of population dynamics and evolutionary problems in recent years. We find that the model generates a normalised age distribution for…

种群与进化 · 定量生物学 2009-11-11 E. Brigatti , J. S. Sa' Martins , I. Roditi

A stochastic genetic model for biological aging is introduced bridging the gap between the bit-string Penna model and the Pletcher-Neuhauser approach. The phenomenon of exponentially increasing mortality function at intermediate ages and…

统计力学 · 物理学 2007-05-23 Zhi-Feng Huang , Dietrich Stauffer

The Penna model is a strategy to simulate the genetic dynamics of age-structured populations, in which the individuals genomes are represented by bit-strings. It provides a simple metaphor for the evolutionary process in terms of the…

种群与进化 · 定量生物学 2009-11-11 Veit Schwämmle , Suzana M. de Oliveira

We describe the simulation method of modelling the population evolution using Monte Carlo based on the Penna model. Individuals in the populations are represented by their diploid genomes. Genes expressed after the minimum reproduction age…

基因组学 · 定量生物学 2009-01-13 Agnieszka Laszkiewicz , Przemyslaw Biecek , Katarzyna Bonkowska , Stanislaw Cebrat

This review deals with computer simulation of biological ageing, particularly with the Penna model of 1995.

种群与进化 · 定量生物学 2007-06-22 D. Stauffer

The idea of this review is to connect the different models of evolution to those of biological ageing through Darwin's theory. We start with the Eigen model of quasispecies for microevolution, then introduce the Bak-Sneppen model for…

统计力学 · 物理学 2007-05-23 S. Moss de Oliveira , Domingos Alves , J. S. Sa Martins

In this paper the Penna model is reconsidered. With computer simulations we check how the control parameters of the model influence the size of the stable population.

种群与进化 · 定量生物学 2007-05-23 K. Malarz , M. Sitarz , P. Gronek , A. Dydejczyk

Can unicellular organisms survive a drastic temperature change, and adapt to it after many generations? In simulations of the Penna model of biological ageing, both extinction and adaptation were found for asexual and sexual reproduction as…

种群与进化 · 定量生物学 2007-05-23 D. Stauffer , H. Arndt

A deterministic model of an age-structured population with genetics analogous to the discrete time Penna model of genetic evolution is constructed on the basis of the Lotka-Volterra scheme. It is shown that if, as in the Penna model,…

种群与进化 · 定量生物学 2007-05-23 Miroslaw R. Dudek

We twice modify the Penna model for biological ageing. First we introduce back (good) mutations and a memory for them into the model. It allows us to observe an improvement of the species fitness over long time scales as well as punctuated…

统计力学 · 物理学 2015-06-24 S. Moss de Oliveira , D. Stauffer , P. M. C de Oliveira , J. S. Sa Martins

This article is a presentation of specific recent results describing scaling limits of individual-based models. Thanks to them, we wish to relate the time-scales typical of demographic dynamics and natural selection to the parameters of the…

概率论 · 数学 2023-08-01 Aurélien Velleret

We use a simple model for biological ageing to study the mortality of the population, obtaining a good agreement with the Gompertz law. We also simulate the same model on a square lattice, considering different strategies of parental care.…

统计力学 · 物理学 2009-11-07 A. O. Sousa , S. Moss de Oliveira , D. Stauffer

The chronological age used in demography describes the linear evolution of the life of a living being. The chronological age cannot give precise information about the exact developmental stage or aging processes an organism has reached. On…

偏微分方程分析 · 数学 2023-10-02 Jacques Demongeot , Pierre Magal

We present a model for biological aging that considers the number of individuals whose (inherited) genetic charge determines the maximum age for death: each individual may die before that age due to some external factor, but never after…

adap-org · 物理学 2008-02-03 R. M. C. de Almeida , S. Moss de Oliveira , T. J. P. Penna

In 1995 T.J.Penna introduced a simple model of biological aging. A modified Penna model has been demonstrated to exhibit behaviour of real-life systems including catastrophic senescence in salmon and a mortality plateau at advanced ages. We…

种群与进化 · 定量生物学 2007-05-23 J. B. Coe , Y. Mao

We present some analytic results for the steady states of the Penna model of sen escence, generalised to allow genetically identical individuals to die at differ ent ages via an arbitrary survival function. Modelling this with a Fermi…

软凝聚态物质 · 物理学 2009-11-07 J. B. Coe , Y. Mao , M. E. Cates
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