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Large Language Models (LLMs) have demonstrated remarkable capabilities on general text; however, their proficiency in specialized scientific domains that require deep, interconnected knowledge remains largely uncharacterized. Metabolomics…

计算与语言 · 计算机科学 2025-10-17 Yuxing Lu , Xukai Zhao , J. Ben Tamo , Micky C. Nnamdi , Rui Peng , Shuang Zeng , Xingyu Hu , Jinzhuo Wang , May D. Wang

Existing ML benchmarks lack the depth and diversity of annotations needed for evaluating models on business process management (BPM) tasks. BPM is the practice of documenting, measuring, improving, and automating enterprise workflows.…

As Vision-Language Models (VLMs) increasingly gain traction in medical applications, clinicians are progressively expecting AI systems not only to generate textual diagnoses but also to produce corresponding medical images that integrate…

计算机视觉与模式识别 · 计算机科学 2025-11-19 Junjie Yang , Yuhao Yan , Gang Wu , Yuxuan Wang , Ruoyu Liang , Xinjie Jiang , Xiang Wan , Fenglei Fan , Yongquan Zhang , Feiwei Qin , Changmiao Wang

Visual language models (VLMs) have the potential to transform medical workflows. However, the deployment is limited by sycophancy. Despite this serious threat to patient safety, a systematic benchmark remains lacking. This paper addresses…

计算机视觉与模式识别 · 计算机科学 2026-05-29 Juangui Xu , Zikun Guo , Jingwei Lv , Hongbin Lin , Shu Yang , Jun Wen , Di Wang , Lijie Hu

The advancements in artificial intelligence in recent years, such as Large Language Models (LLMs), have fueled expectations for breakthroughs in genomic foundation models (GFMs). The code of nature, hidden in diverse genomes since the very…

基因组学 · 定量生物学 2024-10-03 Heng Yang , Jack Cole , Ke Li

Recent advances in video generation have opened new avenues for macroscopic simulation of complex dynamic systems, but their application to microscopic phenomena remains largely unexplored. Microscale simulation holds great promise for…

人工智能 · 计算机科学 2026-03-03 Rongsheng Wang , Minghao Wu , Hongru Zhou , Zhihan Yu , Zhenyang Cai , Junying Chen , Benyou Wang

Training certifiably robust neural networks is an important but challenging task. While many algorithms for (deterministic) certified training have been proposed, they are often evaluated on different training schedules, certification…

机器学习 · 计算机科学 2025-05-29 Yuhao Mao , Stefan Balauca , Martin Vechev

Large Language Models (LLMs) are transforming diverse fields and gaining increasing influence as human proxies. This development underscores the urgent need for evaluating value orientations and understanding of LLMs to ensure their…

计算与语言 · 计算机科学 2024-06-07 Yuanyi Ren , Haoran Ye , Hanjun Fang , Xin Zhang , Guojie Song

Accurate cell nuclei segmentation is critical for downstream tasks in kidney pathology and remains a major challenge due to the morphological diversity and imaging variability of renal tissues. While our prior work has evaluated…

This work presents a systematic investigation into the latent knowledge encoded within Network Foundation Models (NFMs) that focuses on hidden representations analysis rather than pure downstream task performance. Different from existing…

机器学习 · 计算机科学 2025-11-11 Sylee Beltiukov , Satyandra Guthula , Wenbo Guo , Walter Willinger , Arpit Gupta

Deep-learning survival models for electronic health record (EHR) data are hard to compare across papers because the upstream preprocessing step, which includes cohort definition, time discretisation, missingness handling, and censoring…

机器学习 · 计算机科学 2026-05-13 Munib Mesinovic , Tingting Zhu

A reliable foundation model of functional neuroimages is critical to promote clinical applications where the performance of current AI models is significantly impeded by a limited sample size. To that end, tremendous efforts have been made…

机器学习 · 计算机科学 2025-10-23 Ziquan Wei , Tingting Dan , Guorong Wu

As Large Language Model (LLM) alignment evolves from simple completions to complex, highly sophisticated generation, Reward Models are increasingly shifting toward rubric-guided evaluation to mitigate surface-level biases. However, the…

人工智能 · 计算机科学 2026-03-04 Qiyuan Zhang , Junyi Zhou , Yufei Wang , Fuyuan Lyu , Yidong Ming , Can Xu , Qingfeng Sun , Kai Zheng , Peng Kang , Xue Liu , Chen Ma

Computational antibody design has seen rapid methodological progress, with dozens of deep generative methods proposed in the past three years, yet the field lacks a standardized benchmark for fair comparison and model development. These…

机器学习 · 计算机科学 2026-04-02 Mansoor Ahmed , Nadeem Taj , Imdad Ullah Khan , Hemanth Venkateswara , Murray Patterson

Multimodal Large Language Models (MLLMs) have shown significant potential in surgical video understanding. With improved zero-shot performance and more effective human-machine interaction, they provide a strong foundation for advancing…

计算机视觉与模式识别 · 计算机科学 2025-12-09 Ziyang Song , Zelin Zang , Xiaofan Ye , Boqiang Xu , Long Bai , Jinlin Wu , Hongliang Ren , Hongbin Liu , Jiebo Luo , Zhen Lei

In this study, we aim to initiate the development of Radiology Foundation Model, termed as RadFM. We consider the construction of foundational models from three perspectives, namely, dataset construction, model design, and thorough…

计算机视觉与模式识别 · 计算机科学 2023-11-17 Chaoyi Wu , Xiaoman Zhang , Ya Zhang , Yanfeng Wang , Weidi Xie

Vision-language models (VLMs) have recently shown remarkable zero-shot performance in medical image understanding, yet their grounding ability, the extent to which textual concepts align with visual evidence, remains underexplored. In the…

计算机视觉与模式识别 · 计算机科学 2025-10-23 Haozhe Luo , Shelley Zixin Shu , Ziyu Zhou , Sebastian Otalora , Mauricio Reyes

Foundation models (FMs) have achieved significant success across various tasks, leading to research on benchmarks for reasoning abilities. However, there is a lack of studies on FMs performance in exceptional scenarios, which we define as…

人工智能 · 计算机科学 2024-12-06 Suho Kang , Jungyang Park , Joonseo Ha , SoMin Kim , JinHyeong Kim , Subeen Park , Kyungwoo Song

In the global challenge of understanding and characterizing biodiversity, short species-specific genomic sequences known as DNA barcodes play a critical role, enabling fine-grained comparisons among organisms within the same kingdom of…

Visual Foundation Models (VFMs) are becoming ubiquitous in computer vision, powering systems for diverse tasks such as object detection, image classification, segmentation, pose estimation, and motion tracking. VFMs are capitalizing on…

计算机视觉与模式识别 · 计算机科学 2025-08-25 Sandeep Gupta , Roberto Passerone