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The accurate screening of candidate drug ligands against target proteins through computational approaches is of prime interest to drug development efforts. Such virtual screening depends in part on methods to predict the binding affinity…

机器学习 · 计算机科学 2024-10-22 Ho-Joon Lee , Prashant S. Emani , Mark B. Gerstein

Topology Optimization (TO) provides a systematic approach for obtaining structure design with optimum performance of interest. However, the process requires numerical evaluation of objective function and constraints at each iteration, which…

机器学习 · 计算机科学 2022-03-22 Ren Kai Tan , Chao Qian , Dan Xu , Wenjing Ye

Time series modeling techniques based on deep learning have seen many advancements in recent years, especially in data-abundant settings and with the central aim of learning global models that can extract patterns across multiple time…

机器学习 · 计算机科学 2020-05-21 Stephan Rabanser , Tim Januschowski , Valentin Flunkert , David Salinas , Jan Gasthaus

Advancements in deep learning have significantly improved model performance across tasks involving code, text, and image processing. However, these models still exhibit notable mispredictions in real-world applications, even when trained on…

软件工程 · 计算机科学 2025-06-25 Ravishka Rathnasuriya

End-to-end learning has become a widely applicable and studied problem in training predictive ML models to be aware of their impact on downstream decision-making tasks. These end-to-end models often outperform traditional methods that…

机器学习 · 计算机科学 2025-05-19 Rares Cristian , Pavithra Harsha , Georgia Perakis , Brian Quanz

Task-incremental learning involves the challenging problem of learning new tasks continually, without forgetting past knowledge. Many approaches address the problem by expanding the structure of a shared neural network as tasks arrive, but…

机器学习 · 计算机科学 2020-11-24 Azhar Shaikh , Nishant Sinha

Accurate prediction of protein-ligand binding affinity is crucial for rapid and efficient drug development. Recently, the importance of predicting binding affinity has led to increased attention on research that models the three-dimensional…

机器学习 · 计算机科学 2024-07-17 Seungyeon Choi , Sangmin Seo , Sanghyun Park

Instruction-tuned large language models produce helpful, structured responses, but how robust is this helpfulness under trivial constraints? We show that simple lexical constraints (banning a single punctuation character or common word)…

计算与语言 · 计算机科学 2026-04-28 Erfan Baghaei Potraghloo , Seyedarmin Azizi , Souvik Kundu , Massoud Pedram

Using the bit string generation problem as a case study, we theoretically compare two standard methods for adapting large language models to new tasks. The first, referred to as supervised fine-tuning, involves training a new next token…

机器学习 · 统计学 2026-03-31 Seamus Somerstep , Vinod Raman , Unique Subedi , Yuekai Sun

The optimal binning is the optimal discretization of a variable into bins given a discrete or continuous numeric target. We present a rigorous and extensible mathematical programming formulation for solving the optimal binning problem for a…

机器学习 · 计算机科学 2022-12-12 Guillermo Navas-Palencia

Large language models (LLMs), typically designed as a function of next-word prediction, have excelled across extensive NLP tasks. Despite the generality, next-word prediction is often not an efficient formulation for many of the tasks,…

计算与语言 · 计算机科学 2023-11-03 Yuheng Zha , Yichi Yang , Ruichen Li , Zhiting Hu

General-purpose text embedding models underpin a wide range of NLP and information retrieval applications, and are typically trained on large-scale multi-task corpora to encourage broad generalization. However, it remains unclear how…

信息检索 · 计算机科学 2026-02-10 Hengran Zhang , Keping Bi , Jiafeng Guo , Jiaming Zhang , Wenbo Yang , Daiting Shi , Xueqi Cheng

Text classification is an area of research which has been studied over the years in Natural Language Processing (NLP). Adapting NLP to multiple domains has introduced many new challenges for text classification and one of them is long…

计算与语言 · 计算机科学 2023-07-20 Damith Premasiri , Tharindu Ranasinghe , Ruslan Mitkov

Data driven models of dynamical systems help planners and controllers to provide more precise and accurate motions. Most model learning algorithms will try to minimize a loss function between the observed data and the model's predictions.…

人工智能 · 计算机科学 2021-02-12 Clark Zhang , Santiago Paternain , Alejandro Ribeiro

Accurate prediction of protein-ligand binding affinities is crucial for drug development. Recent advances in machine learning show promising results on this task. However, these methods typically rely heavily on labeled data, which can be…

机器学习 · 计算机科学 2024-06-13 Meng Liu , Saee Gopal Paliwal

Fine-tuning large pre-trained language models for downstream tasks remains a critical challenge in natural language processing. This paper presents an empirical analysis comparing two efficient fine-tuning methods - BitFit and adapter…

机器学习 · 计算机科学 2024-01-09 Nigel Doering , Cyril Gorlla , Trevor Tuttle , Adhvaith Vijay

Code optimization is the process of enhancing code efficiency, while preserving its intended functionality. This process often requires a deep understanding of the code execution behavior at run-time to identify and address inefficiencies…

软件工程 · 计算机科学 2026-04-02 Federico Di Menna , Luca Traini , Gabriele Bavota , Vittorio Cortellessa

We classify and re-examine some of the current approaches to improve the performance-computes trade-off of language models, including (1) non-causal models (such as masked language models), (2) extension of batch length with efficient…

计算与语言 · 计算机科学 2020-09-16 Aran Komatsuzaki

Large Language Models (LLMs) have been achieving competent performance on a wide range of downstream tasks, yet existing work shows that inference on structured data is challenging for LLMs. This is because LLMs need to either understand…

计算与语言 · 计算机科学 2024-07-04 Younghun Lee , Sungchul Kim , Ryan A. Rossi , Tong Yu , Xiang Chen

The success of modern deep learning is attributed to two key elements: huge amounts of training data and large model sizes. Where a vast amount of data allows the model to learn more features, the large model architecture boosts the…

机器学习 · 计算机科学 2024-10-08 Muhammad Asif Khan , Ridha Hamila , Hamid Menouar