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Uniform Manifold Approximation and Projection (UMAP) is one of the state-of-the-art methods for dimensionality reduction and data visualization. This is a tutorial and survey paper on UMAP and its variants. We start with UMAP algorithm…

人机交互 · 计算机科学 2021-09-07 Benyamin Ghojogh , Ali Ghodsi , Fakhri Karray , Mark Crowley

Uniform Manifold Approximation and Projection (UMAP) is a widely used manifold learning technique for dimensionality reduction. This paper studies UMAP, supervised UMAP, and several competing dimensionality reduction methods, including…

机器学习 · 计算机科学 2026-05-04 Guanzhe Zhang , Shanshan Ding , Zhezhen Jin

UMAP (Uniform Manifold Approximation and Projection) is a novel manifold learning technique for dimension reduction. UMAP is constructed from a theoretical framework based in Riemannian geometry and algebraic topology. The result is a…

机器学习 · 统计学 2020-09-21 Leland McInnes , John Healy , James Melville

UMAP is a non-parametric graph-based dimensionality reduction algorithm using applied Riemannian geometry and algebraic topology to find low-dimensional embeddings of structured data. The UMAP algorithm consists of two steps: (1) Compute a…

机器学习 · 计算机科学 2021-08-31 Tim Sainburg , Leland McInnes , Timothy Q Gentner

In the BCI field, introspection and interpretation of brain signals are desired for providing feedback or to guide rapid paradigm prototyping but are challenging due to the high noise level and dimensionality of the signals. Deep neural…

机器学习 · 计算机科学 2024-11-05 Peter Wassenaar , Pierre Guetschel , Michael Tangermann

Duplicate marking is a critical preprocessing step in gene sequence analysis to flag redundant reads arising from polymerase chain reaction(PCR) amplification and sequencing artifacts. Although Picard MarkDuplicates is widely recognized as…

基因组学 · 定量生物学 2025-05-12 Zhonghai Zhang , Yewen Li , Ke Meng , Chunming Zhang , Guangming Tan

With the recent surge in big data analytics for hyper-dimensional data there is a renewed interest in dimensionality reduction techniques for machine learning applications. In order for these methods to improve performance gains and…

机器学习 · 计算机科学 2023-01-20 J. Derek Tucker , Matthew T. Martinez , Jose M. Laborde

Steganography and digital watermarking are the tasks of hiding recoverable data in image pixels. Deep neural network (DNN) based image steganography and watermarking techniques are quickly replacing traditional hand-engineered pipelines.…

计算机视觉与模式识别 · 计算机科学 2022-09-27 Shehzeen Hussain , Nojan Sheybani , Paarth Neekhara , Xinqiao Zhang , Javier Duarte , Farinaz Koushanfar

Finetuning on domain-specific data is a well-established method for enhancing LLM performance on downstream tasks. Training on each dataset produces a new set of model weights, resulting in a multitude of checkpoints saved in-house or on…

机器学习 · 计算机科学 2026-03-12 Sofia Maria Lo Cicero Vaina , Artem Chumachenko , Max Ryabinin

In this paper, we propose Wasserstein Isometric Mapping (Wassmap), a nonlinear dimensionality reduction technique that provides solutions to some drawbacks in existing global nonlinear dimensionality reduction algorithms in imaging…

机器学习 · 计算机科学 2023-02-22 Keaton Hamm , Nick Henscheid , Shujie Kang

We present FastRP, a scalable and performant algorithm for learning distributed node representations in a graph. FastRP is over 4,000 times faster than state-of-the-art methods such as DeepWalk and node2vec, while achieving comparable or…

社会与信息网络 · 计算机科学 2019-09-02 Haochen Chen , Syed Fahad Sultan , Yingtao Tian , Muhao Chen , Steven Skiena

Data augmentation techniques play an important role in enhancing the performance of deep learning models. Despite their proven benefits in computer vision tasks, their application in the other domains remains limited. This paper proposes a…

机器学习 · 计算机科学 2024-01-23 Yousef El-Laham , Elizabeth Fons , Dillon Daudert , Svitlana Vyetrenko

Detecting multiple structural breaks in high-dimensional data remains a challenge, particularly when changes occur in higher-order moments or within complex manifold structures. In this paper, we propose REAMP (Resonance-Enhanced Analysis…

统计方法学 · 统计学 2026-01-14 Xiaoping Shi , Baisuo Jin , Xianhui Liu , Qiong Li

Feature embedding-based methods have shown exceptional performance in detecting industrial anomalies by comparing features of target images with normal images. However, some methods do not meet the speed requirements of real-time inference,…

计算机视觉与模式识别 · 计算机科学 2023-03-27 Donghyeong Kim , Chaewon Park , Suhwan Cho , Sangyoun Lee

In the literature on hyper-parameter tuning, a number of recent solutions rely on low-fidelity observations (e.g., training with sub-sampled datasets) in order to efficiently identify promising configurations to be then tested via…

机器学习 · 计算机科学 2022-12-05 Pedro Mendes , Maria Casimiro , Paolo Romano , David Garlan

Large-scale diffusion models such as FLUX (12B parameters) and Stable Diffusion 3 (8B parameters) require multi-GPU parallelism for efficient inference. Unified Sequence Parallelism (USP), which combines Ulysses and Ring attention…

计算机视觉与模式识别 · 计算机科学 2026-02-12 Guandong Li

High computational costs of manifold learning prohibit its application for large point sets. A common strategy to overcome this problem is to perform dimensionality reduction on selected landmarks and to successively embed the entire…

机器学习 · 计算机科学 2015-03-13 Christian Wachinger , Polina Golland

tSNE and UMAP are popular dimensionality reduction algorithms due to their speed and interpretable low-dimensional embeddings. Despite their popularity, however, little work has been done to study their full span of differences. We…

Diffusion maps are an emerging data-driven technique for non-linear dimensionality reduction, which are especially useful for the analysis of coherent structures and nonlinear embeddings of dynamical systems. However, the computational…

机器学习 · 统计学 2018-02-27 N. Benjamin Erichson , Lionel Mathelin , Steven L. Brunton , J. Nathan Kutz

Dimensionality reduction methods are employed to decrease data dimensionality, either to enhance machine learning performance or to facilitate data visualization in two or three-dimensional spaces. These methods typically fall into two…

机器学习 · 计算机科学 2025-08-26 Berat Dogan
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