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We present a new dataset for machine comprehension in the medical domain. Our dataset uses clinical case reports with around 100,000 gap-filling queries about these cases. We apply several baselines and state-of-the-art neural readers to…

计算与语言 · 计算机科学 2018-03-28 Simon Šuster , Walter Daelemans

Medical information extraction consists of a group of natural language processing (NLP) tasks, which collaboratively convert clinical text to pre-defined structured formats. Current state-of-the-art (SOTA) NLP models are highly integrated…

计算与语言 · 计算机科学 2022-03-09 Enwei Zhu , Qilin Sheng , Huanwan Yang , Jinpeng Li

Quantifying uncertainty in clinical predictions is critical for high-stakes diagnosis tasks. Conformal prediction offers a principled approach by providing prediction sets with theoretical coverage guarantees. However, in practice, patient…

Information extraction from copy-heavy documents, characterized by massive volumes of structurally similar content, represents a critical yet understudied challenge in enterprise document processing. We present a systematic framework that…

计算与语言 · 计算机科学 2025-10-14 Zilong Wang , Xiaoyu Shen

Electronic Health Records are large repositories of valuable clinical data, with a significant portion stored in unstructured text format. This textual data includes clinical events (e.g., disorders, symptoms, findings, medications and…

计算与语言 · 计算机科学 2024-09-02 Shubham Agarwal , Thomas Searle , Mart Ratas , Anthony Shek , James Teo , Richard Dobson

Medical imaging is critical to the diagnosis and treatment of numerous medical problems, including many forms of cancer. Medical imaging reports distill the findings and observations of radiologists, creating an unstructured textual…

计算与语言 · 计算机科学 2021-08-23 Kevin Lybarger , Aashka Damani , Martin Gunn , Ozlem Uzuner , Meliha Yetisgen

Electronic Health Records (EHRs) contain rich yet complex information, and their automated analysis is critical for clinical decision-making. Despite recent advances of large language models (LLMs) in clinical workflows, their ability to…

Table structure recognition (TSR) and optical character recognition (OCR) play crucial roles in extracting structured data from tables in scientific documents. However, existing extraction frameworks built on top of TSR and OCR methods…

信息检索 · 计算机科学 2025-07-10 Kehinde Ajayi , Yi He , Jian Wu

While existing critical care EHR datasets such as MIMIC and eICU have enabled significant advances in clinical AI research, the CRITICAL dataset opens new frontiers by providing extensive scale and diversity -- containing 1.95 billion…

机器学习 · 计算机科学 2025-09-24 Xiaolong Luo , Michael Lingzhi Li

The findings section of a radiology report is often detailed and lengthy, whereas the impression section is comparatively more compact and captures key diagnostic conclusions. This research explores the use of advanced abstractive…

计算与语言 · 计算机科学 2025-06-23 Anindita Bhattacharya , Tohida Rehman , Debarshi Kumar Sanyal , Samiran Chattopadhyay

Electronic Health Records (EHRs) are integral for storing comprehensive patient medical records, combining structured data (e.g., medications) with detailed clinical notes (e.g., physician notes). These elements are essential for…

计算与语言 · 计算机科学 2024-12-31 Yeonsu Kwon , Jiho Kim , Gyubok Lee , Seongsu Bae , Daeun Kyung , Wonchul Cha , Tom Pollard , Alistair Johnson , Edward Choi

Oracle character recognition-an analysis of ancient Chinese inscriptions found on oracle bones-has become a pivotal field intersecting archaeology, paleography, and historical cultural studies. Traditional methods of oracle character…

计算机视觉与模式识别 · 计算机科学 2024-11-19 Jing Li , Xueke Chi , Qiufeng Wang , Dahan Wang , Kaizhu Huang , Yongge Liu , Cheng-lin Liu

Electronic health records (EHR) contain large volumes of unstructured text, requiring the application of Information Extraction (IE) technologies to enable clinical analysis. We present the open-source Medical Concept Annotation Toolkit…

In this paper, we present our approach to extracting structured information from unstructured Electronic Health Records (EHR) [2] which can be used to, for example, study adverse drug reactions in patients due to chemicals in their…

计算与语言 · 计算机科学 2020-01-30 Amogh Kamat Tarcar , Aashis Tiwari , Vineet Naique Dhaimodker , Penjo Rebelo , Rahul Desai , Dattaraj Rao

Despite their cultural and historical significance, Black digital archives continue to be a structurally underrepresented area in AI research and infrastructure. This is especially evident in efforts to digitize historical Black newspapers,…

数字图书馆 · 计算机科学 2025-09-17 Fitsum Sileshi Beyene , Christopher L. Dancy

Large Language Models (LLMs) are increasingly used for medical entity extraction, yet their confidence scores are often miscalibrated, limiting safe deployment in clinical settings. We present a conformal prediction framework that provides…

计算与语言 · 计算机科学 2026-03-10 Manil Shrestha , Edward Kim

The rapid adoption of Electronic Health Records (EHRs) has been instrumental in streamlining administrative tasks, increasing transparency, and enabling continuity of care across providers. An unintended consequence of the increased…

计算与语言 · 计算机科学 2024-04-02 Griffin Adams

Automated summarization of clinical texts can reduce the burden of medical professionals. "Discharge summaries" are one promising application of the summarization, because they can be generated from daily inpatient records. Our preliminary…

计算与语言 · 计算机科学 2022-12-21 Kenichiro Ando , Takashi Okumura , Mamoru Komachi , Hiromasa Horiguchi , Yuji Matsumoto

Radiology reports are critical for clinical decision-making but often lack a standardized format, limiting both human interpretability and machine learning (ML) applications. While large language models (LLMs) have shown strong capabilities…

The advent of large language models (LLMs) has opened new avenues for analyzing complex, unstructured data, particularly within the medical domain. Electronic Health Records (EHRs) contain a wealth of information in various formats,…

信息检索 · 计算机科学 2025-06-10 Wu Hao Ran , Xi Xi , Furong Li , Jingyi Lu , Jian Jiang , Hui Huang , Yuzhuan Zhang , Shi Li