中文
相关论文

相关论文: FuseDiff: Symmetry-Preserving Joint Diffusion for …

200 篇论文

Pocket representations play a vital role in various biomedical applications, such as druggability estimation, ligand affinity prediction, and de novo drug design. While existing geometric features and pretrained representations have…

机器学习 · 计算机科学 2024-03-08 Bowen Gao , Yinjun Jia , Yuanle Mo , Yuyan Ni , Weiying Ma , Zhiming Ma , Yanyan Lan

Designing protein sequences with specific biological functions and structural stability is crucial in biology and chemistry. Generative models already demonstrated their capabilities for reliable protein design. However, previous models are…

机器学习 · 计算机科学 2024-02-28 Lin Zongying , Li Hao , Lv Liuzhenghao , Lin Bin , Zhang Junwu , Chen Calvin Yu-Chian , Yuan Li , Tian Yonghong

Predicting molecular conformations from molecular graphs is a fundamental problem in cheminformatics and drug discovery. Recently, significant progress has been achieved with machine learning approaches, especially with deep generative…

机器学习 · 计算机科学 2022-03-16 Minkai Xu , Lantao Yu , Yang Song , Chence Shi , Stefano Ermon , Jian Tang

We present JointDiT, a diffusion transformer that models the joint distribution of RGB and depth. By leveraging the architectural benefit and outstanding image prior of the state-of-the-art diffusion transformer, JointDiT not only generates…

计算机视觉与模式识别 · 计算机科学 2025-08-06 Kwon Byung-Ki , Qi Dai , Lee Hyoseok , Chong Luo , Tae-Hyun Oh

In recent years, diffusion models have demonstrated remarkable success in high-fidelity image synthesis. However, fine-tuning these models for specialized domains, such as medical imaging, remains challenging due to limited domain-specific…

计算机视觉与模式识别 · 计算机科学 2025-10-28 Ruchir Namjoshi , Nagasai Thadishetty , Vignesh Kumar , Hemanth Venkateshwara

Current text-to-image (T2I) generation models struggle to align spatial composition with the input text, especially in complex scenes. Even layout-based approaches yield suboptimal spatial control, as their generation process is decoupled…

计算机视觉与模式识别 · 计算机科学 2025-07-08 Zheyuan Liu , Munan Ning , Qihui Zhang , Shuo Yang , Zhongrui Wang , Yiwei Yang , Xianzhe Xu , Yibing Song , Weihua Chen , Fan Wang , Li Yuan

Diffusion models offer a powerful means of capturing the manifold of realistic protein structures, enabling rapid design for protein engineering tasks. However, existing approaches observe critical failure modes when precise constraints are…

生物大分子 · 定量生物学 2026-03-27 Jacob K. Christopher , Austin Seamann , Jingyi Cui , Sagar Khare , Ferdinando Fioretto

Designing mechanical linkages to achieve target end-effector trajectories presents a fundamental challenge due to the intricate coupling between continuous node placements, discrete topological configurations, and nonlinear kinematic…

机器学习 · 计算机科学 2026-01-08 Yayati Jadhav , Amir Barati Farimani

Efficiently identifying accurate correspondences between point clouds is crucial for both rigid and non-rigid point cloud registration. Existing methods usually rely on geometric or semantic feature embeddings to establish correspondences…

计算机视觉与模式识别 · 计算机科学 2026-04-10 Haihua Shi , Qianliang Wu

In this paper, we present DesignDiffusion, a simple yet effective framework for the novel task of synthesizing design images from textual descriptions. A primary challenge lies in generating accurate and style-consistent textual and visual…

计算机视觉与模式识别 · 计算机科学 2025-03-04 Zhendong Wang , Jianmin Bao , Shuyang Gu , Dong Chen , Wengang Zhou , Houqiang Li

Despite their generative power, diffusion models struggle to maintain style consistency across images conditioned on the same style prompt, hindering their practical deployment in creative workflows. While several training-free methods…

计算机视觉与模式识别 · 计算机科学 2025-09-23 Jiexuan Zhang , Yiheng Du , Qian Wang , Weiqi Li , Yu Gu , Jian Zhang

Accurate spatial correspondence between medical images is essential for longitudinal analysis, lesion tracking, and image-guided interventions. Medical image registration methods rely on local intensity-based similarity measures, which fail…

计算机视觉与模式识别 · 计算机科学 2026-02-24 Xingyu Zhang , Anna Reithmeir , Fryderyk Kögl , Rickmer Braren , Julia A. Schnabel , Daniel M. Lang

Powerful generative AI models of protein-ligand structure have recently been proposed, but few of these methods support both flexible protein-ligand docking and affinity estimation. Of those that do, none can directly model multiple binding…

机器学习 · 计算机科学 2025-03-25 Alex Morehead , Jianlin Cheng

Structure-based drug design (SBDD) aims to efficiently discover high-affinity ligands within vast chemical spaces. However, current generative models struggle with objective misalignment and rigid sampling budgets. We present MolFORM, a…

计算工程、金融与科学 · 计算机科学 2026-02-26 Daiheng Zhang , Zhao Zhang

The sharing of microdata, such as fund holdings and derivative instruments, by regulatory institutions presents a unique challenge due to strict data confidentiality and privacy regulations. These challenges often hinder the ability of both…

机器学习 · 计算机科学 2023-09-06 Timur Sattarov , Marco Schreyer , Damian Borth

Predicting drug-target interaction (DTI) is critical in the drug discovery process. Despite remarkable advances in recent DTI models through the integration of representations from diverse drug and target encoders, such models often…

定量方法 · 定量生物学 2025-09-30 Zhaohan Meng , Zaiqiao Meng , Ke Yuan , Iadh Ounis

Three-dimensional molecular generators based on diffusion models can now reach near-crystallographic accuracy, yet they remain fragmented across tasks. SMILES-only inputs, two-stage pretrain-finetune pipelines, and one-task-one-model…

生物大分子 · 定量生物学 2025-07-11 Dong Xu , Zhangfan Yang , Sisi Yuan , Jenna Xinyi Yao , Jiangqiang Li , Junkai Ji

A significant amount of protein function requires binding small molecules, including enzymatic catalysis. As such, designing binding pockets for small molecules has several impactful applications ranging from drug synthesis to energy…

机器学习 · 计算机科学 2024-06-03 Hannes Stärk , Bowen Jing , Regina Barzilay , Tommi Jaakkola

As multimodal data proliferates across diverse real-world applications, leveraging heterogeneous information such as texts and timestamps for accurate time series forecasting (TSF) has become a critical challenge. While diffusion models…

机器学习 · 计算机科学 2025-12-09 Da Zhang , Bingyu Li , Zhuyuan Zhao , Junyu Gao , Feiping Nie , Xuelong Li

Medical image segmentation suffers from data scarcity, particularly in polyp detection where annotation requires specialized expertise. We present SynDiff, a framework combining text-guided synthetic data generation with efficient…

图像与视频处理 · 电气工程与系统科学 2025-07-22 Muhammad Aqeel , Maham Nazir , Zanxi Ruan , Francesco Setti