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Sex chromosomes have independently evolved in species with separate sexes in most lineages across the tree of life. However, the well-accepted canonical model of sex chromosome evolution is not universally supported. There is no single…

种群与进化 · 定量生物学 2024-08-23 Paris Veltsos , Sagar Shinde , Wen-Juan Ma

Gynandromorphs are creatures where at least two different body sections are a different sex. Bilateral gynandromorphs are half male and half female. Here we develop a theory of gynandromorph ontogeny based on developmental control networks.…

分子网络 · 定量生物学 2012-12-24 Eric Werner

The evolutionary origins of structural features in reconstructed gene-regulatory networks (GRNs) remain poorly understood, especially given the random aspects of gene expression. Here, we extend a classical model of GRN evolution to allow a…

种群与进化 · 定量生物学 2026-04-30 Leonardo Ivan Estrella Dzib , James Holehouse

Genes communicate with each other through different regulatory effects, which lead to the emergence of complex structures in cells, and such structures are expected to be different for normal and cancerous cells. To study breast cancer…

分子网络 · 定量生物学 2020-10-13 Abbas Karimi Rizi , Mina Zamani , Amirhossein Shirazi , G. Reza Jafari , János Kertész

The new dynamical game theoretic model of sex ratio evolution emphasizes the role of males as passive carriers of sex ratio genes. This shows inconsistency between population genetic models of sex ratio evolution and classical strategic…

种群与进化 · 定量生物学 2014-03-05 Krzysztof Argasinski

Segmentation in arthropod embryogenesis represents a well-known example of body plan diversity. Striped patterns of gene expression that lead to the future body segments appear simultaneously or sequentially in long and short germ-band…

分子网络 · 定量生物学 2008-07-31 Koichi Fujimoto , Shuji Ishihara , Kunihiko Kaneko

Sex is considered as an evolutionary paradox, since its evolutionary advantage does not necessarily overcome the two fold cost of sharing half of one's offspring's genome with another member of the population. Here we demonstrate that…

种群与进化 · 定量生物学 2015-05-13 Alexander Feigel , Avraham Englander , Assaf Engel

Sexual reproduction presents significant challenges to formal treatment of evolutionary processes. A starting point for systematic treatments of ecological and evolutionary phenomena has been provided by the gene centered view of evolution…

生物物理 · 物理学 2009-11-06 Hiroki Sayama , Les Kaufman , Yaneer Bar-Yam

Maintaining genetic diversity as a means to avoid premature convergence is critical in Genetic Programming. Several approaches have been proposed to achieve this, with some focusing on the mating phase from coupling dissimilar solutions to…

神经与进化计算 · 计算机科学 2023-03-31 José Maria Simões , Nuno Lourenço , Penousal Machado

A series of studies have revealed the among-population components of genetic variation are higher for the paternal Y chromosome than for the maternal mitochondrial DNA (mtDNA), which indicates sex-biased migrations in human populations.…

种群与进化 · 定量生物学 2013-10-30 Chuan-Chao Wang , Li Jin , Hui Li

Chromosomal rearrangements, which shuffle DNA throughout the genome, are an important source of divergence across taxa. Using a paired-end read approach with Illumina sequence data for archaic humans, I identify changes in genome structure…

基因组学 · 定量生物学 2015-10-07 Rebekah L. Rogers

Constraints in embryonic development are thought to bias the direction of evolution by making some changes less likely, and others more likely, depending on their consequences on ontogeny. Here, we characterize the constraints acting on…

种群与进化 · 定量生物学 2012-03-08 J. Roux , M. Robinson-Rechavi

Dmrt1 is pivotal in testis formation and function by interacting with genes crucial for Sertoli cell differentiation. Dmrt1, or Sox9, forms a conserved antagonistic interaction with Foxl2 across mammals. Across 128 vertebrate species, Dmrt1…

定量方法 · 定量生物学 2025-01-22 Barbora Augstenová , Wen-Juan Ma

Most animals have separate sexes. The differential expression of gene products, in particular that of gene regulators, is underlying sexual dimorphism. Analyses of sex-biased expression have focused mostly in protein coding genes. Several…

种群与进化 · 定量生物学 2014-04-03 Antonio Marco

Genetic Regulatory Networks (GRNs) plays a vital role in the understanding of complex biological processes. Modeling GRNs is significantly important in order to reveal fundamental cellular processes, examine gene functions and understanding…

计算工程、金融与科学 · 计算机科学 2012-05-10 Khalid Raza , Rafat Parveen

Stem cells can precisely and robustly undergo cellular differentiation and lineage commitment, referred to as stemness. However, how the gene network underlying stemness regulation reliably specifies cell fates is not well understood. To…

分子网络 · 定量生物学 2020-04-02 Bin Huang , Mingyang Lu , Madeline Galbraith , Herbert Levine , Jose N. Onuchic , Dongya Jia

Modeling gene regulatory networks (GRNs) is an important topic in systems biology. Although there has been much work focusing on various specific systems, the generic behavior of GRNs with continuous variables is still elusive. In…

分子网络 · 定量生物学 2014-04-23 Zhiyuan Li , Simone Bianco , Zhaoyang Zhang , Chao Tang

The two most fundamental processes describing change in biology, development and evolu-tion, occur over drastically different timescales, difficult to reconcile within a unified framework. Development involves temporal sequences of cell…

生物物理 · 物理学 2020-09-08 Enrico Borriello , Sara I. Walker , Manfred D. Laubichler

It has recently been suggested that the fundamental haploid-diploid cycle of eukaryotic sex exploits a rudimentary form of the Baldwin effect. Thereafter the other associated phenomena can be explained as evolution tuning the amount and…

种群与进化 · 定量生物学 2020-03-17 Larry Bull

The current theory of evolution is almost the one Darwin and Wallace proposed two centuries ago and the following discoveries e.g., Mendelian genetics and neutral mutation theory have not made significant modifications. The current…

种群与进化 · 定量生物学 2023-09-14 Reza Rahmanzadeh
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