相关论文: MetaHQ: Harmonized, high-quality metadata annotati…
Healthcare data are generated in many different formats, which makes it difficult to integrate and reuse across institutions and studies. Standardisation is required to enable consistent large-scale analysis. The OMOP-CDM, developed by the…
Phenotyping consists in applying algorithms to identify individuals associated with a specific, potentially complex, trait or condition, typically out of a collection of Electronic Health Records (EHRs). Because a lot of the clinical…
By the end of the late 90's the Open Archives Initiative needed direction to insure its improvement and thus, created the Open Archives Initiative Protocol for Metadata Harvesting (OAI-PMH) standard. The movement showed a rise in…
This paper addresses the harmonization of metadata from diverse repositories of language resources (LRs). Leveraging linked data and RDF techniques, we integrate data from multiple sources into a unified model based on DCAT and META-SHARE…
Metadata-the machine-readable descriptions of the data-are increasingly seen as crucial for describing the vast array of biomedical datasets that are currently being deposited in public repositories. While most public repositories have firm…
The proliferation of the Open Archive Initiative Protocol for Metadata Harvesting (OAI-PMH) has resulted in the creation of a large number of service providers, all harvesting from either data providers or aggregators. If data were…
The biomedical literature contains a vast collection of omics studies, yet most published data remain functionally inaccessible for computational reuse. When raw data are deposited in public repositories, essential information for…
High-quality and large-scale data are key to success for AI systems. However, large-scale data annotation efforts are often confronted with a set of common challenges: (1) designing a user-friendly annotation interface; (2) training enough…
OpenCitations Meta is a new database for open bibliographic metadata of scholarly publications involved in the citations indexed by the OpenCitations infrastructure, adhering to Open Science principles and published under a CC0 license to…
In this article, we focus on the importance of open research information as the foundation for transparent and responsible research assessment and discovery of research outputs. We introduce work in which we support the open research…
This article presents the OpenCitations Index, a collection of open citation data maintained by OpenCitations, an independent, not-for-profit infrastructure organisation for open scholarship dedicated to publishing open bibliographic and…
Untargeted metabolomics generates large volumes of tandem mass spectrometry (MS/MS) data and computational annotations that can reveal molecular mechanisms across organisms and environments. Public reuse has improved through harmonized…
Metadata, often termed "data about data," is crucial for organizing, understanding, and managing vast omics datasets. It aids in efficient data discovery, integration, and interpretation, enabling users to access, comprehend, and utilize…
Content annotation at scale remains challenging, requiring substantial human expertise and effort. This paper presents a case study in code documentation analysis, where we explore the balance between automation efficiency and annotation…
Research data are often released upon journal publication to enable result verification and reproducibility. For that reason, research dissemination infrastructures typically support diverse datasets coming from numerous disciplines, from…
As Large Language Model (LLM) capabilities advance, the demand for high-quality annotation of exponentially increasing text corpora has outpaced human capacity, leading to the widespread adoption of LLMs in automatic evaluation and…
The metaphor studies community has developed numerous valuable labelled corpora in various languages over the years. Many of these resources are not only unknown to the NLP community, but are also often not easily shared among the…
The metadata about scientific experiments published in online repositories have been shown to suffer from a high degree of representational heterogeneity---there are often many ways to represent the same type of information, such as a…
The Open Archive Initiative Protocol for Metadata Handling (OAI-PMHiii) is a standard that is seeing increased use as a means for exchanging structured metadata. OAI-PMH implementations must support Dublin Core as a metadata standard, with…
There is an ongoing need for scalable tools to aid researchers in both retrospective and prospective standardization of discrete entity types -- such as disease names, cell types or chemicals -- that are used in metadata associated with…