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Proteins are miniature machines whose function depends on their three-dimensional (3D) structure. Determining this structure computationally remains an unsolved grand challenge. A major bottleneck involves selecting the most accurate…

定量方法 · 定量生物学 2020-11-30 Stephan Eismann , Patricia Suriana , Bowen Jing , Raphael J. L. Townshend , Ron O. Dror

Congenital heart disease (CHD) is a relatively rare disease that affects patients at birth and results in extremely heterogeneous anatomical and functional defects. 12-lead ECG signal is routinely collected in CHD patients because it…

信号处理 · 电气工程与系统科学 2024-10-28 Muhammet Alkan , Gruschen Veldtman , Fani Deligianni

Stress can increase the possibility of cognitive impairment and decrease the quality of life in older adults. Smart healthcare can deploy quantum machine learning to enable preventive and diagnostic support. This work introduces a unique…

量子物理 · 物理学 2025-01-10 Md Saif Hassan Onim , Travis S. Humble , Himanshu Thapliyal

In a large-scale medical examination, the UK Biobank study has successfully imaged more than 32,000 volunteer participants with magnetic resonance imaging (MRI). Each scan is linked to extensive metadata, providing a comprehensive medical…

图像与视频处理 · 电气工程与系统科学 2020-10-12 Taro Langner , Robin Strand , Håkan Ahlström , Joel Kullberg

Blood flow reconstruction in the vasculature is important for many clinical applications. However, in clinical settings, the available data are often quite limited. For instance, Transcranial Doppler ultrasound (TCD) is a noninvasive…

图像与视频处理 · 电气工程与系统科学 2024-03-18 Shaghayegh Z. Ashtiani , Mohammad Sarabian , Kaveh Laksari , Hessam Babaee

Differentiating true tumor progression (TP) from treatment-related pseudoprogression (PsP) in glioblastoma remains challenging, especially at early follow-up. We present the first stage-specific, cross-sectional benchmarking of deep…

计算机视觉与模式识别 · 计算机科学 2025-12-30 Wenhao Guo , Golrokh Mirzaei

Machine-learning models based on a point-cloud representation of a physical object are ubiquitous in scientific applications and particularly well-suited to the atomic-scale description of molecules and materials. Among the many different…

化学物理 · 物理学 2023-03-08 Filippo Bigi , Sergey N. Pozdnyakov , Michele Ceriotti

Predicting patient survival probabilities based on observed covariates is an important assessment in clinical practice. These patient-specific covariates are often measured over multiple follow-up appointments. It is then of interest to…

统计方法学 · 统计学 2021-11-11 Annabel L. Davies , Anthony C. C. Coolen , Tobias Galla

Prostate cancer (PCa) is one of the most common cancers in men worldwide. Bi-parametric MRI (bp-MRI) and clinical variables are crucial for PCa identification and improving treatment decisions. However, this process is subjective to expert…

计算机视觉与模式识别 · 计算机科学 2026-02-03 Juan A. Olmos , Antoine Manzanera , Fabio Martínez

Distance metrics and their nonlinear variant play a crucial role in machine learning based real-world problem solving. We demonstrated how Euclidean and cosine distance measures differ not only theoretically but also in real-world medical…

机器学习 · 计算机科学 2021-02-25 Der-Chen Chang , Ophir Frieder , Chi-Feng Hung , Hao-Ren Yao

We analytically determine Jacobi fields and parallel transports and compute geodesic regression in Kendall's shape space. Using the derived expressions, we can fully leverage the geometry via Riemannian optimization and thereby reduce the…

Topological data analysis (TDA) has emerged as a powerful tool for extracting meaningful insights from complex data. TDA enhances the analysis of objects by embedding them into a simplicial complex and extracting useful global properties…

量子物理 · 物理学 2023-07-17 Massimiliano Incudini , Francesco Martini , Alessandra Di Pierro

Parkinsons disease, the fastest growing neurodegenerative disorder globally, has seen a 50 percent increase in cases within just two years. As speech, memory, and motor symptoms worsen over time, early diagnosis is crucial for preserving…

定量方法 · 定量生物学 2024-12-02 Diya Vatsavai , Anya Iyer , Ashwin A. Nair

Preoperative improvement rate prediction for Parkinson's disease surgery is clinically important yet difficult because imaging signals are subtle and patients are heterogeneous. We address this setting, where only information available…

计算机视觉与模式识别 · 计算机科学 2026-03-03 Yand Wang , Chen Zhang , Lanyun Zhu , Yixin Chen , Qunbo Wang , Yutong Bai , Jurgen Germann , Yinghong Wen , Shuai Shao

We propose a 3D neural network with specific loss functions for quantitative computed tomography (QCT) noise reduction to compute micro-structural parameters such as tissue mineral density (TMD) and bone volume ratio (BV/TV) with…

图像与视频处理 · 电气工程与系统科学 2020-11-11 Felix Thomsen , José M. Fuertes García , Manuel Lucena , Juan Pisula , Rodrigo de Luis García , Jan Broggrefe , Claudio Delrieux

Accurately predicting protein structures from amino acid sequences remains a fundamental challenge in computational biology, with profound implications for understanding biological functions and enabling structure-based drug discovery.…

Linear quantile regression is a powerful tool to investigate how predictors may affect a response heterogeneously across different quantile levels. Unfortunately, existing approaches find it extremely difficult to adjust for any dependency…

统计方法学 · 统计学 2019-10-30 Xu Chen , Surya T. Tokdar

Objective: Chronic obstructive pulmonary disease (COPD) is a highly prevalent chronic condition. COPD is a major source of morbidity, mortality and healthcare costs. Spirometry is the gold standard test for a definitive diagnosis and…

信号处理 · 电气工程与系统科学 2020-12-11 Jeremy Levy , Daniel Alvarez , Felix del Campo , Joachim A. Behar

Genetic algorithms are a widely used method in chemometrics for extracting variable subsets with high prediction power. Most fitness measures used by these genetic algorithms are based on the ordinary least-squares fit of the resulting…

统计计算 · 统计学 2017-11-21 David Kepplinger , Peter Filzmoser , Kurt Varmuza

Objective: To establish an automated pipeline for post-processing of quantitative spin-lattice relaxation time constant in the rotating frame ($T_{1\rho}$) imaging of knee articular cartilage. Design: The proposed post-processing pipeline…

图像与视频处理 · 电气工程与系统科学 2024-09-20 Junru Zhong , Yongcheng Yao , Fan Xiao , Tim-Yun Michael Ong , Ki-Wai Kevin Ho , Siyue Li , Chaoxing Huang , Queenie Chan , James F. Griffith , Weitian Chen